WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 32739465

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
183116614	GT-AG	1.000000099473604e-05	2537	rna-XM_011090294.2 32739465	1	16137267	16139803	Sesamum indicum 4182	AAG\|GTACGAGTTT...ATGGTTTTACCT/AATGGTTTTACC...GGCAG\|CTG	2	1	10.793
183116615	GT-AG	1.000000099473604e-05	88	rna-XM_011090294.2 32739465	2	16134566	16134653	Sesamum indicum 4182	GAG\|GTAGGATCAG...TTTCAGTTAACT/TTGGTATTTATA...GTTAG\|GTG	2	1	69.671
183116616	GT-AG	0.0011767540626258	611	rna-XM_011090294.2 32739465	3	16133741	16134351	Sesamum indicum 4182	CAG\|GTAGACTTGA...TATGCCCTGACC/TATGCCCTGACC...AACAG\|GAT	0	1	74.493
183116617	GT-AG	1.000000099473604e-05	83	rna-XM_011090294.2 32739465	4	16133376	16133458	Sesamum indicum 4182	CAG\|GTAATGTATA...GTCTCTTCAATT/CAATTACTGAGC...CCCAG\|TTG	0	1	80.847
183116618	GT-AG	0.0024592892029769	103	rna-XM_011090294.2 32739465	5	16133213	16133315	Sesamum indicum 4182	AAG\|GTAATCTTGT...GCTCTCTTGATG/TAGTTGCTAAAT...TTCAG\|ATG	0	1	82.199
183116619	GT-AG	1.000000099473604e-05	272	rna-XM_011090294.2 32739465	6	16132810	16133081	Sesamum indicum 4182	AAG\|GTAATAGATG...TCTATCTTATAC/TTGGATTTCATT...ATCAG\|CAT	2	1	85.151
183116620	GT-AG	1.000000099473604e-05	302	rna-XM_011090294.2 32739465	7	16132393	16132694	Sesamum indicum 4182	CAG\|GTGGTGTTCT...ATGTCATCAACT/CATCAACTAACT...ATTAG\|GAT	0	1	87.742
183125152	GT-AG	1.000000099473604e-05	988	rna-XM_011090294.2 32739465	8	16131233	16132220	Sesamum indicum 4182	TAG\|GTTTGGATCT...ACACTCACAACT/CTAACACTCACA...CGTAG\|GGC		0	91.618

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);