WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 32739454

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
183116368	GT-AG	0.0036596733140652	2294	rna-XM_011097160.2 32739454	1	167875	170168	Sesamum indicum 4182	GAG\|GTATTTTATA...CTCCCCTTTTTT/TCTGACCTGATG...ATCAG\|GGC	1	1	27.303
183116369	GT-AG	1.000000099473604e-05	114	rna-XM_011097160.2 32739454	2	167287	167400	Sesamum indicum 4182	TAG\|GTGGGTGGCT...GATGACTTAATC/TCTAAACTCACC...TGCAG\|GAG	1	1	36.614
183116370	GT-AG	1.000000099473604e-05	682	rna-XM_011097160.2 32739454	3	166303	166984	Sesamum indicum 4182	GAG\|GTCAGTAGGT...ACCCTTTTGATC/ACCCTTTTGATC...GCCAG\|GTT	0	1	42.546
183116371	GT-AG	1.3957582361809882e-05	79	rna-XM_011097160.2 32739454	4	165498	165576	Sesamum indicum 4182	AAG\|GTTTGGTTGC...AACATCTTACTT/TAGAAATTGATT...CTCAG\|GCT	0	1	56.806
183116372	GT-AG	1.000000099473604e-05	161	rna-XM_011097160.2 32739454	5	165058	165218	Sesamum indicum 4182	CCG\|GTAAGATAAT...AAGCCTTTTGTT/GCGTAACTCATC...CCTAG\|GTT	0	1	62.286
183116373	GT-AG	3.40003148108158e-05	127	rna-XM_011097160.2 32739454	6	164769	164895	Sesamum indicum 4182	GCA\|GTAAGCGAGA...TTTCCTTTGAGC/TTTCCTTTGAGC...TGCAG\|GTC	0	1	65.468
183116374	GT-AG	1.000000099473604e-05	70	rna-XM_011097160.2 32739454	7	163760	163829	Sesamum indicum 4182	AAG\|GTAATTATTT...CTATTGTTGACA/CTATTGTTGACA...GGCAG\|TCT	0	1	83.913
183116375	GT-AG	1.000000099473604e-05	474	rna-XM_011097160.2 32739454	8	163070	163543	Sesamum indicum 4182	AAG\|GTTTGACATC...ACTTTCATGATG/ATTACTTTCATG...TGCAG\|AGG	0	1	88.156
183116376	GT-AG	1.000000099473604e-05	609	rna-XM_011097160.2 32739454	9	162200	162808	Sesamum indicum 4182	GAG\|GTCTTTGCTT...GATTACTCAATG/ATGATGCTGACA...GCCAG\|CAA	0	1	93.282

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);