introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

5 rows where transcript_id = 32739437

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Suggested facets: dinucleotide_pair, score, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
183116084 GT-AG 0 0.0001058058950941 183 rna-XM_011075965.2 32739437 2 8332484 8332666 Sesamum indicum 4182 CAG|GTAAATTTCA...ATGTTTTTATTT/TATGTTTTTATT...TGCAG|AGA 1 1 2.544
183116085 GC-AG 0 1.000000099473604e-05 1322 rna-XM_011075965.2 32739437 3 8334832 8336153 Sesamum indicum 4182 AAG|GCTGCTTGAC...TTGGTGTTAGTT/CTCTCTCTAAAA...TATAG|TCA 0 1 30.085
183116086 GT-AG 0 1.000000099473604e-05 3976 rna-XM_011075965.2 32739437 4 8336192 8340167 Sesamum indicum 4182 GAG|GTAATTGCTT...TCCTTCTAAGCT/TTCCTTCTAAGC...CCCAG|GTT 2 1 30.569
183116087 GT-AG 0 0.0003636776024093 142 rna-XM_011075965.2 32739437 5 8340290 8340431 Sesamum indicum 4182 CAG|GTATGGTTTT...TCAGTGTTGACC/TCAGTGTTGACC...TGCAG|AAA 1 1 32.121
183125135 GT-AG 0 1.000000099473604e-05 1480 rna-XM_011075965.2 32739437 1 8330801 8332280 Sesamum indicum 4182 CAG|GTAATTGACC...TGATTCTAAACC/TTGTATTTCAAC...TGCAG|ATC   0 1.387

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);