WtMTA: introns: 5 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

5 rows where transcript_id = 32455399

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
181392272	GT-AG	1.000000099473604e-05	912	rna-gnl\|WGS:VXBX\|SCYSUP_R12912_mrna 32455399	1	170171	171082	Scytalopus superciliaris 312124	CAG\|GTAACACAGA...CCCTCTCTACTG/ACTCTACTAAAA...TTCAG\|TAT	2	1	15.639
181392273	GT-AG	0.0078439309882767	3285	rna-gnl\|WGS:VXBX\|SCYSUP_R12912_mrna 32455399	2	171136	174420	Scytalopus superciliaris 312124	CAG\|GTATGCTATG...TTTGTCTGAGCT/TTGTTTTTCATG...CCTAG\|GTG	1	1	21.689
181392274	GT-AG	0.0010418521821565	3454	rna-gnl\|WGS:VXBX\|SCYSUP_R12912_mrna 32455399	3	174529	177982	Scytalopus superciliaris 312124	AAG\|GTATGTTTAT...AGTCCTATATTT/ATTGAGATAACT...TTCAG\|AGC	1	1	34.018
181392275	GT-AG	1.000000099473604e-05	557	rna-gnl\|WGS:VXBX\|SCYSUP_R12912_mrna 32455399	4	178114	178670	Scytalopus superciliaris 312124	CAG\|GTAAGAGTCT...TATTCCTTGTAA/TAGTCACTCAGG...CCCAG\|ATG	0	1	48.973
181392276	GT-AG	1.000000099473604e-05	2296	rna-gnl\|WGS:VXBX\|SCYSUP_R12912_mrna 32455399	5	178765	181060	Scytalopus superciliaris 312124	CAG\|GTGAGAGCTG...GTTTCCTTATTC/TGTTTCCTTATT...CTTAG\|GAA	1	1	59.703

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);