WtMTA: introns: 5 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

5 rows where transcript_id = 32455354

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
181391933	GT-AG	1.000000099473604e-05	3635	rna-gnl\|WGS:VXBX\|SCYSUP_R08830_mrna 32455354	1	4531	8165	Scytalopus superciliaris 312124	CAG\|GTGAGTTGCC...CTCTTCTTAATG/TCTCTTCTTAAT...TCTAG\|GAT	1	1	42.667
181391934	GT-AG	1.2029984923251663e-05	1817	rna-gnl\|WGS:VXBX\|SCYSUP_R08830_mrna 32455354	2	8256	10072	Scytalopus superciliaris 312124	TTG\|GTAAGTATTG...GTTTTCTTCTCT/ACAGTTCTGATT...TTAAG\|CAT	1	1	53.576
181391935	GT-AG	1.000000099473604e-05	359	rna-gnl\|WGS:VXBX\|SCYSUP_R08830_mrna 32455354	3	10175	10533	Scytalopus superciliaris 312124	AAG\|GTAAGTGATT...TCTGGTTTACTA/GGTTTACTAATT...TGTAG\|ATG	1	1	65.939
181391936	GT-AG	1.000000099473604e-05	531	rna-gnl\|WGS:VXBX\|SCYSUP_R08830_mrna 32455354	4	10627	11157	Scytalopus superciliaris 312124	TTG\|GTGAGTATTT...TCTTTCTTTTTT/CTGTAGTTAAAC...CCCAG\|TTT	1	1	77.212
181391937	GT-AG	1.000000099473604e-05	1524	rna-gnl\|WGS:VXBX\|SCYSUP_R08830_mrna 32455354	5	11254	12777	Scytalopus superciliaris 312124	AAG\|GTAAGCAATC...TTGCTTTTATTG/GTTGCTTTTATT...AACAG\|CCT	1	1	88.848

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);