WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 32241377

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
180024639	GT-AG	0.0003556405584449	37	rna-XM_012941423.2 32241377	2	1291959	1291995	Schistosoma haematobium 6185	TGG\|GTATGATTTG...TATTTCACAATT/ACATATTTCACA...TGCAG\|TCC	2	1	9.828
180024640	GT-AG	0.0001038582618527	38	rna-XM_012941423.2 32241377	3	1292183	1292220	Schistosoma haematobium 6185	CAT\|GTAGGTTGAC...TTAACGTTAATT/CTGTGATTAACG...TCAAG\|GCT	0	1	24.415
180024641	GT-AG	0.0007092091445634	1097	rna-XM_012941423.2 32241377	4	1292460	1293556	Schistosoma haematobium 6185	AGT\|GTAAGTTTGT...AGGACTTTACCA/CAGGACTTTACC...TTTAG\|AAA	2	1	43.058
180024642	GT-AG	0.0135169656890237	2000	rna-XM_012941423.2 32241377	5	1293698	1295697	Schistosoma haematobium 6185	CAC\|GTATGTTGTT...TTCATATTGATT/TTCATATTGATT...TTCAG\|ATG	2	1	54.056
180024643	GT-AG	0.0061940578859843	3193	rna-XM_012941423.2 32241377	6	1295877	1299069	Schistosoma haematobium 6185	CAA\|GTATGTGTGT...TTGTGCTTAATT/TTTTTCCTGATT...CACAG\|ATA	1	1	68.019
180024644	GT-AG	0.0009280054346803	3008	rna-XM_012941423.2 32241377	7	1299184	1302191	Schistosoma haematobium 6185	TTG\|GTATGTATAA...AATTCCTTGTTT/ATTTGTATCATT...TTTAG\|GTC	1	1	76.911
180024645	GT-AG	1.000000099473604e-05	1326	rna-XM_012941423.2 32241377	8	1302296	1303621	Schistosoma haematobium 6185	GTG\|GTAAGATATA...TTTTCTTTAAAA/TTTATTCTCATT...TTTAG\|CGT	0	1	85.023
180024703	GT-AG	1.000000099473604e-05	174	rna-XM_012941423.2 32241377	1	1291586	1291759	Schistosoma haematobium 6185	CCT\|GTAAAACACG...TTGTTCTTCTCT/AGAAAACTAACA...TTCAG\|ATT		0	2.886

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);