WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 32241350

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
180024492	GT-AG	1.883178766734556e-05	1359	rna-XM_012939329.2 32241350	2	1391992	1393350	Schistosoma haematobium 6185	AAG\|GTAAATTGAT...TTTATCTTACTA/ATTTATCTTACT...TTAAG\|CTT	2	1	46.776
180024493	GT-AG	1.000000099473604e-05	9421	rna-XM_012939329.2 32241350	3	1382525	1391945	Schistosoma haematobium 6185	GTG\|GTAAGTTATT...GATGATTTGACT/CTAATTTTCACT...TTCAG\|AGG	0	1	50.731
180024494	GT-AG	0.0029408524362917	1295	rna-XM_012939329.2 32241350	4	1381185	1382479	Schistosoma haematobium 6185	CAA\|GTAAACTATT...AAAACTTTGATT/TTATGTTTAACC...TATAG\|ACA	0	1	54.6
180024495	GT-AG	1.000000099473604e-05	930	rna-XM_012939329.2 32241350	5	1380110	1381039	Schistosoma haematobium 6185	AAA\|GTAAGTAAAG...ATCATCTTATTT/GCATTATTTACT...TTCAG\|CTG	1	1	67.068
180024496	GT-AG	5.486739058142401e-05	2843	rna-XM_012939329.2 32241350	6	1377122	1379964	Schistosoma haematobium 6185	AGT\|GTAAGTATAT...TATGTTTTATTG/TTGTGTTTGATT...TTTAG\|CAT	2	1	79.536
180024497	GT-AG	1.000000099473604e-05	6821	rna-XM_012939329.2 32241350	7	1370232	1377052	Schistosoma haematobium 6185	AAG\|GTGAGTTAGA...AAACTTTTACTG/TAAACTTTTACT...TTTAG\|CAA	2	1	85.469
180024498	GT-AG	1.000000099473604e-05	2022	rna-XM_012939329.2 32241350	8	1368115	1370136	Schistosoma haematobium 6185	ATG\|GTTAGTCTAT...TTCTTCTTGCCT/TCTTGCCTCATT...CATAG\|ATC	1	1	93.637
180024536	GT-AG	0.0014588920092847	9053	rna-XM_012939329.2 32241350	1	1393861	1402913	Schistosoma haematobium 6185	AAG\|GTATGTTGAA...ACAATCTTAAAA/TTCTTTTTCATA...TCAAG\|TAA		0	6.621

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);