WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 32241337

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
180024410	GT-AG	0.0001075685073475	39	rna-XM_035733479.1 32241337	1	701255	701293	Schistosoma haematobium 6185	TAG\|GTAGTTTAAT...TTCACTTTAGCA/GAGCTTTTCACT...TTTAG\|ATT	1	1	4.583
180024411	GT-AG	1.000000099473604e-05	3836	rna-XM_035733479.1 32241337	2	697279	701114	Schistosoma haematobium 6185	CAG\|GTAGGTTAGG...TAAATTTTAAAA/GCATTGCTTATA...TTAAG\|GTG	0	1	11.875
180024412	GT-AG	1.000000099473604e-05	2736	rna-XM_035733479.1 32241337	3	694432	697167	Schistosoma haematobium 6185	CAG\|GTTGGAATTT...GTATCCTTATTA/TGTATCCTTATT...TTCAG\|GAA	0	1	17.656
180024413	GT-AG	1.000000099473604e-05	1416	rna-XM_035733479.1 32241337	4	692809	694224	Schistosoma haematobium 6185	AAG\|GTTAGTCTGT...TATTCCTTATCA/CATATTTTCACT...TACAG\|CTT	0	1	28.438
180024414	GT-AG	1.000000099473604e-05	3862	rna-XM_035733479.1 32241337	5	688764	692625	Schistosoma haematobium 6185	CAG\|GTAGAAAATG...TAATTCTCATTT/ATAATTCTCATT...TACAG\|ATT	0	1	37.969
180024415	GT-AG	1.000000099473604e-05	2745	rna-XM_035733479.1 32241337	6	685926	688670	Schistosoma haematobium 6185	AAG\|GTTGAGAAAA...CTTTTTTTGATA/CTTTTTTTGATA...CCTAG\|CTT	0	1	42.812
180024416	GT-AG	2.560594040766792e-05	8382	rna-XM_035733479.1 32241337	7	676925	685306	Schistosoma haematobium 6185	ATG\|GTAAGTTGTT...ATAGTCATAACT/CCAGAGCTAACC...AACAG\|AGA	1	1	75.052
180024417	GT-AG	2.8291216418728697	2947	rna-XM_035733479.1 32241337	8	673684	676630	Schistosoma haematobium 6185	ACG\|GTATCTTCTG...ATGGTTTGAATT/TTTGAATTAATT...GTTAG\|CGT	1	1	90.365

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);