WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 32241328

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
180024310	GT-AG	0.0042154916860402	629	rna-XM_035733485.1 32241328	1	1046614	1047242	Schistosoma haematobium 6185	TTC\|GTATTACTGA...TATATATTAGTT/TTTATATTTATA...GGAAG\|AAT	1	1	3.408
180024311	GT-AG	1.000000099473604e-05	3461	rna-XM_035733485.1 32241328	2	1042116	1045576	Schistosoma haematobium 6185	AAA\|GTAAGTAAAA...TAGTCTTTAATC/CATATATTTATA...ACCAG\|GCT	0	1	28.294
180024312	GT-AG	0.0029540317862146	10422	rna-XM_035733485.1 32241328	3	1031225	1041646	Schistosoma haematobium 6185	AAG\|GTATACCATA...TAAGTGTTAGTG/GTGTGAGTGATG...TATAG\|TGA	1	1	39.549
180024313	GT-AG	1.000000099473604e-05	23127	rna-XM_035733485.1 32241328	4	1007670	1030796	Schistosoma haematobium 6185	AAA\|GTGGGATGAA...ATGCACTTATAG/AATGCACTTATA...GATAG\|GAA	0	1	49.82
180024314	GT-AG	1.000000099473604e-05	49	rna-XM_035733485.1 32241328	5	1007330	1007378	Schistosoma haematobium 6185	AAA\|GTTCAATACG...TTCTTCGGGATA/GGGATACTAACA...TCAAG\|ATA	0	1	56.803
180024315	GT-AG	0.0001002924741245	157	rna-XM_035733485.1 32241328	6	1006467	1006623	Schistosoma haematobium 6185	TCA\|GTAAGATTTG...TCACTCTTCACT/AGTCTTCTGACC...CTAAG\|CAA	1	1	73.746
180024316	GT-AG	1.000000099473604e-05	1773	rna-XM_035733485.1 32241328	7	1003955	1005727	Schistosoma haematobium 6185	CAG\|GTGCATCCAC...TTTCCCATACAG/CAGGTGTTTATT...AACAG\|TTG	2	1	91.481

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);