introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 32210570

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
179854406 GT-AG 0 0.0014553173666051 1414 rna-XM_047243746.1 32210570 3 913968314 913969727 Schistocerca piceifrons 274613 AAG|GTAACATTAC...GTTGCTTTAATA/CTTATTTTTATT...TTTAG|ACT 0 1 4.347
179854407 GT-AG 0 1.000000099473604e-05 83 rna-XM_047243746.1 32210570 4 913968089 913968171 Schistocerca piceifrons 274613 AAG|GTAACTGACA...ACTTCAGTAATT/ATTATATTCATG...TTCAG|GGA 1 1 7.3
179854408 GT-AG 0 1.000000099473604e-05 7694 rna-XM_047243746.1 32210570 5 913956757 913964450 Schistocerca piceifrons 274613 GAG|GTAAGTTAAT...AATTTCTGAACT/AAATGATTGATT...TTCAG|ATA 0 1 82.966
179854409 GT-AG 0 0.0051082104943022 11571 rna-XM_047243746.1 32210570 6 913944907 913956477 Schistocerca piceifrons 274613 AAG|GTATCAAATA...CATTTGTTATTT/TTGTTATTTATA...TTCAG|ACT 0 1 88.769
179854410 GT-AG 0 1.000000099473604e-05 77 rna-XM_047243746.1 32210570 7 913944587 913944663 Schistocerca piceifrons 274613 GAA|GTAAGTAAGG...ATTACCTTGAGT/CAATTTATTACC...TCCAG|GTT 0 1 93.823
179869941 GT-AG 0 0.0005401450048624 12691 rna-XM_047243746.1 32210570 1 914004913 914017603 Schistocerca piceifrons 274613 AAT|GTATGTGAAA...TTTTTCTTTGCA/TTCATATTCAAA...GGCAG|TCC   0 1.04
179869942 GT-AG 0 1.000000099473604e-05 34983 rna-XM_047243746.1 32210570 2 913969903 914004885 Schistocerca piceifrons 274613 CAG|GTGAGTGCCA...TTTTCCTTGAAT/TTTTCCTTGAAT...TTCAG|ATT   0 1.601

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);