WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 32191450

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
179734373	GT-AG	0.0457266013477243	2234	rna-XM_047133885.1 32191450	1	930511468	930513701	Schistocerca americana 7009	CTG\|GTACCCAAGT...TAATCTTTGTAT/ATTAAATTTATG...ATTAG\|AAA	0	1	0.489
179734374	GT-AG	0.0011775656819966	84	rna-XM_047133885.1 32191450	2	930511291	930511374	Schistocerca americana 7009	TTG\|GTATGAATAT...TTTTCCTTGAAT/ATAACATTTATC...TTCAG\|ATT	0	1	2.385
179734375	GT-AG	0.0113865347842065	79	rna-XM_047133885.1 32191450	3	930511181	930511259	Schistocerca americana 7009	AAT\|GTACACTGAA...TATACATTGATG/AATGTTATTATT...CATAG\|CAG	1	1	3.017
179734376	GT-AG	1.000000099473604e-05	1323	rna-XM_047133885.1 32191450	4	930509700	930511022	Schistocerca americana 7009	CAT\|GTTAAAATTT...GTTGCTTTAATA/CTTATTTTTATT...TTTAG\|ACT	0	1	6.239
179734377	GT-AG	1.5061502071390564e-05	83	rna-XM_047133885.1 32191450	5	930509475	930509557	Schistocerca americana 7009	AAG\|GTAACTGACA...ACTTCAGTAATT/ATTCTATTCATG...TTCAG\|CGA	1	1	9.134
179734378	GT-AG	1.000000099473604e-05	7934	rna-XM_047133885.1 32191450	6	930497903	930505836	Schistocerca americana 7009	GAG\|GTAAGTTAAT...AATTTCTGAACT/GAATAATTGATT...TTCAG\|ATA	0	1	83.303
179734379	GT-AG	0.0051082104943022	8792	rna-XM_047133885.1 32191450	7	930488832	930497623	Schistocerca americana 7009	AAG\|GTATCAAATA...CATTTGTTATTT/TTGTTATTTATA...TTCAG\|ACT	0	1	88.991
179734380	GT-AG	1.000000099473604e-05	77	rna-XM_047133885.1 32191450	8	930488512	930488588	Schistocerca americana 7009	GAA\|GTAAGTAAGG...ATTACCTTGAGT/CAATTTATTACC...TCTAG\|GTT	0	1	93.945

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);