WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 32191437

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
179734063	GT-AG	0.0006344561121373	55537	rna-XM_047136466.1 32191437	1	481857559	481913095	Schistocerca americana 7009	ATT\|GTACGTCCCT...ATTTCATTGAAT/ATTTGTGTCACT...TTTAG\|ACA	1	1	1.214
179734064	GT-AG	1.000000099473604e-05	15922	rna-XM_047136466.1 32191437	2	481841437	481857358	Schistocerca americana 7009	GAG\|GTAAAGTTTT...AATTTGTTAACA/CTTTTGTTTATT...CACAG\|GCT	0	1	5.006
179734065	GT-AG	1.000000099473604e-05	459	rna-XM_047136466.1 32191437	3	481836965	481837423	Schistocerca americana 7009	GAG\|GTTAGTATAA...TATATCTTAACA/TCTTTGCTCATT...CCCAG\|GGC	2	1	81.096
179734066	GT-AG	0.0081361219167502	50826	rna-XM_047136466.1 32191437	4	481786033	481836858	Schistocerca americana 7009	CAG\|GTATGCTATG...ATATTTTTCACA/ATATTTTTCACA...TTCAG\|AAA	0	1	83.106
179734067	GT-AG	1.000000099473604e-05	27852	rna-XM_047136466.1 32191437	5	481757890	481785741	Schistocerca americana 7009	GAG\|GTACAGTATT...TTATTTATAGTT/ACTTTATTTATA...TTCAG\|GTA	0	1	88.623
179734068	GT-AG	1.000000099473604e-05	47193	rna-XM_047136466.1 32191437	6	481710540	481757732	Schistocerca americana 7009	AAG\|GTAAGTTTGC...TTTTATTTAATC/TTTTATTTAATC...TTCAG\|CAG	1	1	91.6
179734069	GT-AG	0.0022381112035781	73	rna-XM_047136466.1 32191437	7	481710321	481710393	Schistocerca americana 7009	CAG\|GTAACTCTGA...ATGTTCTTGAAT/TTTTTATTTATG...TGTAG\|GTA	0	1	94.369

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);