WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 32191409

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
179733417	GT-AG	1.000000099473604e-05	133189	rna-XM_047146074.1 32191409	1	1167577491	1167710679	Schistocerca americana 7009	CAG\|GTAAGCCGCG...CTTGCCTTCATG/GTGTGTTTGACG...TGCAG\|GTG	0	1	1.985
179733418	GT-AG	1.000000099473604e-05	46500	rna-XM_047146074.1 32191409	2	1167530898	1167577397	Schistocerca americana 7009	AAG\|GTAAGCGGCG...TTATTCTTAATG/TTTATTCTTAAT...TACAG\|GAA	0	1	3.487
179733419	GT-AG	2.6233375736877915e-05	113	rna-XM_047146074.1 32191409	3	1167530650	1167530762	Schistocerca americana 7009	TTC\|GTAAGTGATA...AACTTCTTATCA/CAGTTATTAACA...TTTAG\|GAA	0	1	5.666
179733420	GT-AG	1.000000099473604e-05	1150	rna-XM_047146074.1 32191409	4	1167529335	1167530484	Schistocerca americana 7009	CAG\|GTAATGAGAA...CATTCCTTGATG/TTGTTTGTTACT...CACAG\|ATG	0	1	8.329
179733421	GT-AG	1.000000099473604e-05	131	rna-XM_047146074.1 32191409	5	1167529072	1167529202	Schistocerca americana 7009	CCG\|GTAATTAGAA...ACTATTTTAACT/TTTTAACTCACT...AACAG\|AGT	0	1	10.46
179733422	GT-AG	3.888197499204875e-05	872	rna-XM_047146074.1 32191409	6	1167526982	1167527853	Schistocerca americana 7009	CAG\|GTAATTTTTC...GTAACATTAGTA/TGTGTGGTAACA...TTTAG\|TTG	0	1	30.121
179733423	GT-AG	1.000000099473604e-05	5160	rna-XM_047146074.1 32191409	7	1167521551	1167526710	Schistocerca americana 7009	AAG\|GTGAGAAGAA...GAAGTGTTAACT/TTCTGTTTAAAT...TTCAG\|ATA	1	1	34.496

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);