WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 32094439

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
179201499	GT-AG	0.000719627137031	53	rna-XM_012338192.1 32094439	1	224144	224196	Saprolegnia parasitica 101203	AGT\|GTACGTCCCA...GTCTCCTCAACG/TCTCCTCTCACT...TGCAG\|TTG	1	1	9.554
179201500	GT-AG	0.0001087726545477	45	rna-XM_012338192.1 32094439	2	223908	223952	Saprolegnia parasitica 101203	TCG\|GTACGCGTCG...GCTTCTCCAACA/CATCACATCACC...TATAG\|AGC	0	1	16.213
179201501	GT-AG	0.0148185143444863	48	rna-XM_012338192.1 32094439	3	223727	223774	Saprolegnia parasitica 101203	TTG\|GTAGCCCATC...CATATCGTGATG/TGATGGCTCATA...GATAG\|CTT	1	1	20.851
179201502	GT-AG	1.148265906537776e-05	46	rna-XM_012338192.1 32094439	4	223507	223552	Saprolegnia parasitica 101203	AAG\|GTACTCGCCA...ATCGCATCAAAT/CATCGCATCAAA...TGTAG\|CTG	1	1	26.918
179201503	GT-AG	0.1349570542953637	53	rna-XM_012338192.1 32094439	5	222989	223041	Saprolegnia parasitica 101203	CGG\|GTATGTTTTT...GGGTTTTTAACG/GGGTTTTTAACG...ACTAG\|CGA	1	1	43.131
179201504	GT-AG	0.0117532994945749	46	rna-XM_012338192.1 32094439	6	221820	221865	Saprolegnia parasitica 101203	AAA\|GTATCAACGT...AAGTTGTTACAT/CATCGACTGATG...TGTAG\|ATG	2	1	82.287
179201505	GT-AG	0.0006956252175524	49	rna-XM_012338192.1 32094439	7	221656	221704	Saprolegnia parasitica 101203	AAG\|GTAGCTTCAA...GACGTTTGGAAT/CCAAAGCTCATG...GCTAG\|TTT	0	1	86.297

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);