WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 32077004

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
179146479	GT-AG	0.0005992701040081	326	rna-XM_008605753.1 32077004	2	879045	879370	Saprolegnia diclina 112098	ACG\|GTACGTTCTA...TTGTCTTTCAAC/TTGTCTTTCAAC...CGTAG\|CCA	1	1	1.244
179146480	GT-AG	1.000000099473604e-05	49	rna-XM_008605753.1 32077004	3	861305	861353	Saprolegnia diclina 112098	AAG\|GTACAACGCG...AGTTGTCTAATG/AGTTGTCTAATG...ACTAG\|GCA	1	1	78.443
179146481	GT-AG	4.8831955432752046e-05	48	rna-XM_008605753.1 32077004	4	859629	859676	Saprolegnia diclina 112098	AAC\|GTACGTTCGT...CGGTATTGGATT/ATTGGATTCAGG...TCTAG\|GTT	0	1	85.547
179146482	GT-AG	0.0007010961785182	52	rna-XM_008605753.1 32077004	5	858843	858894	Saprolegnia diclina 112098	TCG\|GTACACTGTC...GTTGCGATACTT/CAGTCTGTCATG...TGTAG\|GCT	2	1	88.75
179146483	GT-AG	0.0009218607725517	57	rna-XM_008605753.1 32077004	6	857963	858019	Saprolegnia diclina 112098	GTC\|GTGCGCTTGG...TTTTTCTGGTCC/CTGGTCCGGAAA...AGAAG\|CTC	0	1	92.342
179146484	GT-AG	0.0003021263667971	58	rna-XM_008605753.1 32077004	7	857335	857392	Saprolegnia diclina 112098	ATG\|GTATGTCATC...GATACATTGATA/GATACACTGATA...TTTAG\|GTG	0	1	94.829
179146485	GT-AG	0.0001006304519943	51	rna-XM_008605753.1 32077004	8	856854	856904	Saprolegnia diclina 112098	ACA\|GTATGACGAT...GGTTCATTATTG/TTGAGGTTCATT...ACTAG\|GTG	1	1	96.705
179148390	GT-AG	0.0005179126139257	43	rna-XM_008605753.1 32077004	1	879653	879695	Saprolegnia diclina 112098	GAG\|GTATGCATTT...TGCTGCATATAA/ATATAAGTGAAC...CGTAG\|CGT		0	0.074

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);