WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 31460341

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
175006768	GT-AG	1.000000099473604e-05	2813	rna-XM_016140000.2 31460341	4	26706326	26709138	Rousettus aegyptiacus 9407	GAG\|GTAAGTTCAG...ATTTCATTATTA/TTCATTATTACC...GCCAG\|GTT	0	1	73.634
175006769	GT-AG	1.000000099473604e-05	30927	rna-XM_016140000.2 31460341	5	26675253	26706179	Rousettus aegyptiacus 9407	AGG\|GTAAGAATCA...TCCCCTTTATCA/CCCTTTATCATG...CATAG\|GTA	2	1	75.439
175006770	GT-AG	1.000000099473604e-05	6369	rna-XM_016140000.2 31460341	6	26668708	26675076	Rousettus aegyptiacus 9407	AAG\|GTAAGAGACA...TTGTCCTCATTC/CTTGTCCTCATT...TCCAG\|GGA	1	1	77.614
175006771	GT-AG	1.000000099473604e-05	4272	rna-XM_016140000.2 31460341	7	26664349	26668620	Rousettus aegyptiacus 9407	AAG\|GTAAGGCATT...CTGGCTGTGACC/CCTGTGTTCACA...CACAG\|GAA	1	1	78.69
175006772	GT-AG	1.000000099473604e-05	1139	rna-XM_016140000.2 31460341	8	26662296	26663434	Rousettus aegyptiacus 9407	TGG\|GTGAGTTCCT...CTGGCCTCACCG/CCTGGCCTCACC...CCCAG\|CAG	0	1	89.988
175021426	GT-AG	1.000000099473604e-05	188347	rna-XM_016140000.2 31460341	1	26815852	27004198	Rousettus aegyptiacus 9407	AAG\|GTAGGGGACT...ATTTTCTCACTT/AATTTTCTCACT...CACAG\|GTC		0	7.466
175021427	GT-AG	4.2057555529590896e-05	66227	rna-XM_016140000.2 31460341	2	26749544	26815770	Rousettus aegyptiacus 9407	CAG\|GTAAGCTCTC...AACTGCTTGACC/TGTTTACTGACC...TGCAG\|GAT		0	8.467
175021428	GT-AG	1.000000099473604e-05	34612	rna-XM_016140000.2 31460341	3	26714733	26749344	Rousettus aegyptiacus 9407	CAG\|GTAAGAAACG...TGTGTTTTGTCA/TGTTTTGTCACA...AGAAG\|AAC		0	10.927

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);