introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 31460331

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Suggested facets: score, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
175006424 GT-AG 0 1.000000099473604e-05 37673 rna-XM_016128207.2 31460331 2 129032799 129070471 Rousettus aegyptiacus 9407 CAG|GTGAGGGCGC...TACTTTTTATTA/ATACTTTTTATT...AACAG|ACA 0 1 3.276
175006425 GT-AG 0 1.000000099473604e-05 182 rna-XM_016128207.2 31460331 3 129070627 129070808 Rousettus aegyptiacus 9407 ATT|GTGAGTAGAC...GTATCCTTACCA/TGTATCCTTACC...TTTAG|AAG 2 1 5.15
175006426 GT-AG 0 1.000000099473604e-05 2184 rna-XM_016128207.2 31460331 4 129070888 129073071 Rousettus aegyptiacus 9407 CAG|GTGAGAATAT...GTTTATTTAATA/GTTTATTTAATA...TATAG|GTA 0 1 6.105
175006427 GT-AG 0 5.664689142518943e-05 12299 rna-XM_016128207.2 31460331 5 129073208 129085506 Rousettus aegyptiacus 9407 AAG|GTAAATTTTC...TATGTCTTGTTT/TCATTACTAAAT...TAAAG|TGA 1 1 7.749
175006428 GT-AG 0 1.000000099473604e-05 6699 rna-XM_016128207.2 31460331 6 129085710 129092408 Rousettus aegyptiacus 9407 GAG|GTGAGTATGT...ATATCCTTTTTC/TATATCCTAATA...TGTAG|ATT 0 1 10.203
175006429 GT-AG 0 1.000000099473604e-05 2301 rna-XM_016128207.2 31460331 7 129092546 129094846 Rousettus aegyptiacus 9407 TTG|GTGAGTTGAT...TTATTTTTATAC/CTTATTTTTATA...TTTAG|GGA 2 1 11.859
175006430 GT-AG 0 1.000000099473604e-05 3519 rna-XM_016128207.2 31460331 8 129094989 129098507 Rousettus aegyptiacus 9407 GAG|GTAAGAATAA...TCTGTGTTGATT/TCTGTGTTGATT...CACAG|ACT 0 1 13.576
175021398 GT-AG 0 1.000000099473604e-05 221 rna-XM_016128207.2 31460331 1 129032381 129032601 Rousettus aegyptiacus 9407 AGG|GTAAGTAAAC...ATTGTGTTATCA/CATTGTGTTATC...CCCAG|GTG   0 1.245

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);