WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 31411929

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
174865984	GT-AG	8.505880484039502e-05	54	rna-NCT539_LOCUS21 31411929	1	150085	150138	Rotaria sp. silwood2 2762512	TAG\|GTATTATAAT...ATGTTCTGATCA/GATGTTCTGATC...AATAG\|GTC	1	1	5.247
174865985	GT-AG	0.0020438889909108	62	rna-NCT539_LOCUS21 31411929	2	150321	150382	Rotaria sp. silwood2 2762512	ACT\|GTAAGTTTAT...TTACCTTTATCT/TTCATATTAATT...TATAG\|TTA	0	1	12.269
174865986	GT-AG	1.000000099473604e-05	51	rna-NCT539_LOCUS21 31411929	3	151054	151104	Rotaria sp. silwood2 2762512	ATG\|GTTAGAAGAT...ATTTCATTAAGA/AAGAATTTCATT...TCTAG\|TTC	2	1	38.156
174865987	GT-AG	1.000000099473604e-05	76	rna-NCT539_LOCUS21 31411929	4	151356	151431	Rotaria sp. silwood2 2762512	TAG\|GTTAGATTAT...TTTGTTTTATTT/TTTTGTTTTATT...ACTAG\|ATG	1	1	47.84
174865988	GT-AG	0.0016250484958636	70	rna-NCT539_LOCUS21 31411929	5	151614	151683	Rotaria sp. silwood2 2762512	GAA\|GTAAATTTTT...TTTTTTTTGAAG/TTTTTGTTTATT...TATAG\|TTT	0	1	54.861
174865989	GT-AG	1.000000099473604e-05	59	rna-NCT539_LOCUS21 31411929	6	151847	151905	Rotaria sp. silwood2 2762512	AAA\|GTAAAAATTT...ATTTTTTTAAAA/TTATTATTTATT...TTTAG\|ATG	1	1	61.15
174865990	GT-AG	3.7419176292857545e-05	58	rna-NCT539_LOCUS21 31411929	7	152070	152127	Rotaria sp. silwood2 2762512	CCA\|GTAAGTCATT...ATTATTTTATTT/TATTATTTTATT...ATTAG\|ATT	0	1	67.477
174865991	GT-AG	0.0031130545796461	66	rna-NCT539_LOCUS21 31411929	8	152240	152305	Rotaria sp. silwood2 2762512	TAG\|GTATTAATCA...GTTTTCTTATCT/TGTTTTCTTATC...TTAAG\|ATT	1	1	71.798

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);