WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 31411924

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
174865934	GT-AG	0.0127585444310963	70	rna-NCT539_LOCUS162 31411924	1	883138	883207	Rotaria sp. silwood2 2762512	AAT\|GTATGTTTAA...GTTTTCTAATTT/TGTTTTCTAATT...TCTAG\|GGG	1	1	10.32
174865935	GT-AG	0.0291179083469881	77	rna-NCT539_LOCUS162 31411924	2	883484	883560	Rotaria sp. silwood2 2762512	TTG\|GTATGTTATT...TAAATTTTAACA/TTTTTTTTGAAA...TTTAG\|ATT	1	1	20.716
174865936	GT-AG	0.0011277680830967	66	rna-NCT539_LOCUS162 31411924	3	883919	883984	Rotaria sp. silwood2 2762512	TCC\|GTTCGTATTG...TGTTTCTTAAAT/TTGTTTCTTAAA...TTTAG\|TAT	2	1	34.2
174865937	GT-AG	1.000000099473604e-05	476	rna-NCT539_LOCUS162 31411924	4	884116	884591	Rotaria sp. silwood2 2762512	TAG\|GTAAAAGAAT...GTTTTTTTGTTT/AATAAACTTAGT...ATTAG\|GTA	1	1	39.134
174865938	GT-AG	1.2545595382173712e-05	671	rna-NCT539_LOCUS162 31411924	5	885288	885958	Rotaria sp. silwood2 2762512	TTG\|GTAAATAGAA...TTATTCTTATTT/ATTATTCTTATT...TTTAG\|CTG	1	1	65.348
174865939	GT-AG	3.080502166392681e-05	54	rna-NCT539_LOCUS162 31411924	6	886247	886300	Rotaria sp. silwood2 2762512	CAA\|GTAAGATTTC...TATGTTTTAATT/TATGTTTTAATT...TTTAG\|GTG	1	1	76.196
174865940	GT-AG	0.0076451050399117	62	rna-NCT539_LOCUS162 31411924	7	886412	886473	Rotaria sp. silwood2 2762512	TTT\|GTACGTATTT...TTGTTTTTAAAT/TTGTTTTTAAAT...TTTAG\|CGG	1	1	80.377
174865941	GT-AG	1.000000099473604e-05	315	rna-NCT539_LOCUS162 31411924	8	886713	887027	Rotaria sp. silwood2 2762512	CAC\|GTTATGTGAC...ATTACTTTATTT/TTTATTTTTAAT...TATAG\|ATT	0	1	89.379

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);