WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 31341626

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
174593148	GT-AG	1.9699128900641733e-05	72	rna-NZN594_LOCUS1101 31341626	1	5967159	5967230	Rotaria sp. silwood1 2762511	AAA\|GTAAGTTGAA...TTAATTTTATAT/ATTAATTTTATA...AATAG\|AAT	0	1	21.924
174593149	GT-AG	1.2554809236390092e-05	65	rna-NZN594_LOCUS1101 31341626	2	5966890	5966954	Rotaria sp. silwood1 2762511	AAA\|GTAAGGTGTT...TTTTCTTTACTA/TTTTTCTTTACT...TTTAG\|TTT	0	1	26.066
174593150	GT-AG	6.621928394107565e-05	1040	rna-NZN594_LOCUS1101 31341626	3	5965721	5966760	Rotaria sp. silwood1 2762511	CAG\|GTAACGATGA...CTATTTTTATAT/TATATACTTATT...TTTAG\|ATA	0	1	28.685
174593151	GT-AG	1.000000099473604e-05	64	rna-NZN594_LOCUS1101 31341626	4	5965562	5965625	Rotaria sp. silwood1 2762511	AAG\|GTAAAATGTG...AAATATTTATTT/CAAATATTTATT...CTTAG\|ATG	2	1	30.613
174593152	GT-AG	0.0056177092633759	59	rna-NZN594_LOCUS1101 31341626	5	5965376	5965434	Rotaria sp. silwood1 2762511	CAA\|GTATAATCTT...ATTTTTTTATAA/AATTTTTTTATA...TTTAG\|TTA	0	1	33.191
174593153	GT-AG	1.000000099473604e-05	64	rna-NZN594_LOCUS1101 31341626	6	5965149	5965212	Rotaria sp. silwood1 2762511	AAG\|GTAAGAAATG...ATTTGTTTAAAA/ATTTGTTTAAAA...TTTAG\|CTG	1	1	36.5
174593154	GT-AG	1.5237630980700338e-05	721	rna-NZN594_LOCUS1101 31341626	7	5963569	5964289	Rotaria sp. silwood1 2762511	TAA\|GTAAGTTAGC...AAGGTATTATTT/CAAGGTATTATT...TTTAG\|AAT	2	1	53.938
174593155	GT-AG	1.000000099473604e-05	1388	rna-NZN594_LOCUS1101 31341626	8	5961192	5962579	Rotaria sp. silwood1 2762511	TTG\|GTAAGAAGAA...AATTTTTTAAAA/CAATAATTAATT...TTAAG\|GCA	1	1	74.015

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);