introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 31341584

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
174592116 GT-AG 0 6.405373604337412e-05 283 rna-NZN594_LOCUS170 31341584 1 947559 947841 Rotaria sp. silwood1 2762511 ACC|GTAAGTTATT...TAAATATTGATA/TGATAATTAATT...TCAAG|GTG 1 1 6.412
174592117 GT-AG 0 0.0003207761039555 68 rna-NZN594_LOCUS170 31341584 2 948267 948334 Rotaria sp. silwood1 2762511 GAA|GTAAACATGG...TTTTCTTTCTTT/CAACATTTCACT...TTTAG|AAC 0 1 8.479
174592118 GT-AG 0 0.0001400264782307 58 rna-NZN594_LOCUS170 31341584 3 948424 948481 Rotaria sp. silwood1 2762511 AAA|GTAAATTAAA...ATTACTTTATTT/CTTTATTTTATA...TGTAG|AAC 2 1 8.912
174592119 GT-AG 0 0.0021719903990983 611 rna-NZN594_LOCUS170 31341584 4 948830 949440 Rotaria sp. silwood1 2762511 AAA|GTAAATTTCG...ATATTTTTAATA/ATATTTTTAATA...TGTAG|AAC 2 1 10.605
174592120 GT-AG 0 0.0001122145202301 63 rna-NZN594_LOCUS170 31341584 5 950608 950670 Rotaria sp. silwood1 2762511 CAG|GTAAATTATT...TTTTTCTTAAAT/TTTTTTGTCATT...ACTAG|TAC 2 1 16.282
174592121 GT-AG 0 0.0001433222871691 227 rna-NZN594_LOCUS170 31341584 6 957549 957775 Rotaria sp. silwood1 2762511 CAG|GTTACTTTAG...AACCTTTTGAAC/AACCTTTTGAAC...GGTAG|TAC 1 1 49.742
174592122 GT-AG 0 3.883998682422387e-05 54 rna-NZN594_LOCUS170 31341584 7 960352 960405 Rotaria sp. silwood1 2762511 AGT|GTACGTGAAT...TTTTTTTCAACG/CTTTTTTTCAAC...TATAG|TTA 0 1 62.274

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);