WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 31282380

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
174343171	GT-AG	1.000000099473604e-05	718	rna-JXQ802_LOCUS30 31282380	1	141506	142223	Rotaria sordida 392033	AGA\|GTAAGACGTA...ACATACTTAATT/ACATACTTAATT...TTTAG\|TAC	2	1	2.055
174343172	GT-AG	1.000000099473604e-05	65	rna-JXQ802_LOCUS30 31282380	2	141326	141390	Rotaria sordida 392033	CGG\|GTAGAAATTA...TCTATGTTAATT/TCTATGTTAATT...GATAG\|GAA	0	1	12.332
174343173	GT-AG	0.0002232346150332	52	rna-JXQ802_LOCUS30 31282380	3	141157	141208	Rotaria sordida 392033	AAA\|GTTTGTAGTA...TTTATCTTATTT/TTTTATCTTATT...TCTAG\|GTA	0	1	22.788
174343174	GT-AG	1.000000099473604e-05	57	rna-JXQ802_LOCUS30 31282380	4	140997	141053	Rotaria sordida 392033	CTG\|GTTTGTAATA...TTTGTTTTATAT/ATTTGTTTTATA...TCTAG\|GTG	1	1	31.993
174343175	GT-AG	7.750103863189863e-05	96	rna-JXQ802_LOCUS30 31282380	5	140731	140826	Rotaria sordida 392033	AAG\|GTAAATTATT...TTTTTTTTAATA/TTTTTTTTAATA...TATAG\|ATG	0	1	47.185
174343176	GT-AG	0.0005153542415237	67	rna-JXQ802_LOCUS30 31282380	6	140475	140541	Rotaria sordida 392033	ACA\|GTAAATTAGT...ATTATTTTATCT/AATTATTTTATC...TTCAG\|GAT	0	1	64.075
174343177	GT-AG	0.0107584876990065	73	rna-JXQ802_LOCUS30 31282380	7	140201	140273	Rotaria sordida 392033	CAA\|GTATGTCTTC...ATTGTTTTATTA/ATATTATTAACT...TATAG\|CAA	0	1	82.038
174343178	GT-AG	1.000000099473604e-05	58	rna-JXQ802_LOCUS30 31282380	8	140016	140073	Rotaria sordida 392033	AAG\|GTTAGAAAAA...ATTTTCTTTTTT/AATTTAATCATT...TCTAG\|CTG	1	1	93.387

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);