WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 31282371

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
174343129	GT-AG	3.009785633993405e-05	52	rna-JXQ802_LOCUS94 31282371	1	517365	517416	Rotaria sordida 392033	ATT\|GTAAGATATA...TTTATTTTAATG/TATTATTTTATT...TATAG\|AAT	0	1	5.425
174343130	GT-AG	5.546121887919757e-05	62	rna-JXQ802_LOCUS94 31282371	2	517225	517286	Rotaria sordida 392033	AAT\|GTGTGTAGTT...TTATTTTTATCA/TTTATTTTTATC...CATAG\|GAC	0	1	11.557
174343131	GT-AG	1.000000099473604e-05	53	rna-JXQ802_LOCUS94 31282371	3	517000	517052	Rotaria sordida 392033	ATG\|GTTAGGAAAA...TTTTTTTTCTTT/TTTTGTTTTATG...CACAG\|AAA	1	1	25.079
174343132	GT-AG	1.000000099473604e-05	52	rna-JXQ802_LOCUS94 31282371	4	516724	516775	Rotaria sordida 392033	AAG\|GTTATTTGAT...TATGTCTTAAAT/TATGTCTTAAAT...TCTAG\|AAA	0	1	42.689
174343133	GT-AG	1.000000099473604e-05	58	rna-JXQ802_LOCUS94 31282371	5	516567	516624	Rotaria sordida 392033	ATA\|GTAAAATAAA...AATTTTTAAAAT/GAAAAATTCATT...TATAG\|AAA	0	1	50.472
174343134	GT-AG	1.000000099473604e-05	61	rna-JXQ802_LOCUS94 31282371	6	516395	516455	Rotaria sordida 392033	AAT\|GTTAGTCTTA...TATTTCTTTTCT/TCTTTTCTCATT...TAAAG\|ACT	0	1	59.198
174343135	GT-AG	0.0313670953587984	70	rna-JXQ802_LOCUS94 31282371	7	516198	516267	Rotaria sordida 392033	CAA\|GTATATTTAT...ATCTCTTTTTCA/AACACTTTCATG...ATTAG\|GAG	1	1	69.182
174343136	GT-AG	1.1440077728263944e-05	65	rna-JXQ802_LOCUS94 31282371	8	516028	516092	Rotaria sordida 392033	ATA\|GTTAGTATTT...TTCTTTTTGATA/TTCTTTTTGATA...TTAAG\|TTT	1	1	77.437
174343137	GT-AG	7.966732599991595e-05	59	rna-JXQ802_LOCUS94 31282371	9	515856	515914	Rotaria sordida 392033	AAG\|GTCTATTAAT...AAATCCTTGTTT/ATTCTTTTCAAT...AATAG\|CAT	0	1	86.321

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);