WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 31282360

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
174343072	GT-AG	1.000000099473604e-05	82	rna-JXQ802_LOCUS86 31282360	1	471804	471885	Rotaria sordida 392033	CTG\|GTATGAAAAC...TTTTTTTTGTTT/TTTTGTTTCATT...TCTAG\|GTG	1	1	1.014
174343073	GT-AG	1.000000099473604e-05	59	rna-JXQ802_LOCUS86 31282360	2	472054	472112	Rotaria sordida 392033	GTG\|GTTAATTATT...TTTATATTAATT/TTTATATTAATT...TGTAG\|AAT	1	1	11.66
174343074	GT-AG	0.0074749344679202	481	rna-JXQ802_LOCUS86 31282360	3	472271	472751	Rotaria sordida 392033	GTT\|GTATGTAAGA...TTTTGTTTAATT/TTTTGTTTAATT...CATAG\|ATG	0	1	21.673
174343075	GT-AG	1.000000099473604e-05	75	rna-JXQ802_LOCUS86 31282360	4	472917	472991	Rotaria sordida 392033	GAA\|GTAATTGAAA...ATCTTTTTATTT/TTTTTATTTATT...AAAAG\|GAA	0	1	32.129
174343076	GT-AG	1.000000099473604e-05	55	rna-JXQ802_LOCUS86 31282360	5	473236	473290	Rotaria sordida 392033	GAG\|GTACAAAAAA...ACAAGATTAATT/ACAAGATTAATT...TTTAG\|GTC	1	1	47.592
174343077	GT-AG	0.0027800476112977	44	rna-JXQ802_LOCUS86 31282360	6	473655	473698	Rotaria sordida 392033	AAA\|GTATTATCTA...TAATTATTAATT/TAATTATTAATT...CTTAG\|GTC	2	1	70.659
174343078	GT-AG	7.514994877284769e-05	80	rna-JXQ802_LOCUS86 31282360	7	473987	474066	Rotaria sordida 392033	CAA\|GTAAGTATTT...TTTTTTTTAAAA/TTTTTGCTAATA...TTAAG\|AAT	2	1	88.91

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);