WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 31282347

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
174343002	GT-AG	4.634507013290153e-05	68	rna-JXQ802_LOCUS85 31282347	1	468300	468367	Rotaria sordida 392033	ATA\|GTAAGATATT...ATATTCTTGATT/TTGTTTTTAACA...AATAG\|TGA	1	1	11.876
174343003	GT-AG	1.000000099473604e-05	603	rna-JXQ802_LOCUS85 31282347	2	468846	469448	Rotaria sordida 392033	TAG\|GTTAGTATTT...ATATTTTTATTT/TATATTTTTATT...TGAAG\|AGG	2	1	35.729
174343004	GT-AG	0.0002884241404957	180	rna-JXQ802_LOCUS85 31282347	3	469952	470131	Rotaria sordida 392033	AAG\|GTTACTTATA...TTAATTTTGACC/TTAATTTTGACC...TTTAG\|CTG	1	1	60.828
174343005	GT-AG	1.000000099473604e-05	67	rna-JXQ802_LOCUS85 31282347	4	470397	470463	Rotaria sordida 392033	TGA\|GTTAGTTATT...TCTATTTTATTA/ATTTAATTTATT...AATAG\|TGA	2	1	74.052
174343006	GT-AG	0.0092575641586825	54	rna-JXQ802_LOCUS85 31282347	5	470551	470604	Rotaria sordida 392033	TAT\|GTATGTTACT...AATTTCATATTC/TTCATATTCATA...TATAG\|TAC	2	1	78.393
174343007	GT-AG	0.000115165754736	468	rna-JXQ802_LOCUS85 31282347	6	470654	471121	Rotaria sordida 392033	ATT\|GTAAATATAT...AAATCATTAATA/TTAATATTTATT...AATAG\|ATT	0	1	80.838
174343008	GT-AG	1.0159908758473926e-05	52	rna-JXQ802_LOCUS85 31282347	7	471240	471291	Rotaria sordida 392033	TTG\|GTAGGATTTT...AGTTTATTGATT/AGTTTATTGATT...TCTAG\|ATT	1	1	86.727
174343009	GT-AG	1.000000099473604e-05	64	rna-JXQ802_LOCUS85 31282347	8	471366	471429	Rotaria sordida 392033	AAA\|GTTAGATTTA...TTTTTTTTATTT/TTTTTTTTTATT...TTAAG\|GAA	0	1	90.419

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);