introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 31249558

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
174208886 GT-AG 0 1.000000099473604e-05 55 rna-FME351_LOCUS64 31249558 1 270403 270457 Rotaria socialis 392032 ATG|GTAGGATGAA...ATTTTCATAATA/ATTGAAATCATC...TTTAG|GCG 0 1 14.759
174208887 GT-AG 0 1.000000099473604e-05 61 rna-FME351_LOCUS64 31249558 2 270222 270282 Rotaria socialis 392032 CAA|GTAAAGTAAA...TTTTTTTTAATA/TTTTTTTTAATA...GATAG|GCT 0 1 26.807
174208888 GT-AG 0 1.000000099473604e-05 577 rna-FME351_LOCUS64 31249558 3 269582 270158 Rotaria socialis 392032 CAG|GTAAGAAATA...GAATCTTTATTT/TGAATCTTTATT...CGTAG|ATT 0 1 33.133
174208889 GT-AG 0 1.0702646371089912e-05 47 rna-FME351_LOCUS64 31249558 4 269465 269511 Rotaria socialis 392032 CAG|GTATAAATAA...TAAACTTCAAAG/AGTAAATTAACA...TTTAG|AAT 1 1 40.161
174208890 GT-AG 0 0.2429097746784704 76 rna-FME351_LOCUS64 31249558 5 269328 269403 Rotaria socialis 392032 CAA|GTATATTTCA...TTTATTTTATTT/TTTTATTTTATT...TTTAG|TAT 2 1 46.285
174208891 GT-AG 0 1.000000099473604e-05 49 rna-FME351_LOCUS64 31249558 6 269232 269280 Rotaria socialis 392032 CAG|GTAAATAAGA...CTAATTTTCATA/CTAATTTTCATA...TATAG|CTC 1 1 51.004
174208892 GT-AG 0 1.000000099473604e-05 46 rna-FME351_LOCUS64 31249558 7 268967 269012 Rotaria socialis 392032 GTG|GTAAGAGAAT...TTTTGTTTAAAA/TTTTGTTTAAAA...AATAG|GTC 1 1 72.992
174208893 GT-AG 0 0.0003744079018956 65 rna-FME351_LOCUS64 31249558 8 268762 268826 Rotaria socialis 392032 CAG|GTAAATTTGA...CTTGCTTTGATT/CTTTGATTTATT...TTAAG|ATT 0 1 87.048

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);