introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 31249532

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
174208787 GT-AG 0 1.000000099473604e-05 62 rna-FME351_LOCUS3 31249532 1 20716 20777 Rotaria socialis 392032 CAG|GTAAGATAAG...ATCTCTATATTT/TCTATATTTATT...AATAG|CGT 1 1 6.175
174208788 GT-AG 0 0.0001621485969233 62 rna-FME351_LOCUS3 31249532 2 20580 20641 Rotaria socialis 392032 GCA|GTACGAAAAT...TTATTCTTAATG/TATTTATTTATT...TTAAG|CCA 0 1 10.047
174208789 GT-AG 0 1.000000099473604e-05 62 rna-FME351_LOCUS3 31249532 3 20155 20216 Rotaria socialis 392032 TCT|GTAAGAGAAG...GTGTTTTTAATT/GTGTTTTTAATT...TTCAG|AAA 0 1 29.042
174208790 GT-AG 0 1.4282555024657712e-05 52 rna-FME351_LOCUS3 31249532 4 20049 20100 Rotaria socialis 392032 CAA|GTAAATGAAT...TTTTTTTTAGTT/TTTTTTTTTAGT...TCTAG|AAA 0 1 31.868
174208791 GT-AG 0 1.000000099473604e-05 528 rna-FME351_LOCUS3 31249532 5 19276 19803 Rotaria socialis 392032 CAG|GTGCATAATT...AGTCTTTTAATT/AATTAATTCATC...TTTAG|GAA 2 1 44.689
174208792 GT-AG 0 3.0242644653152985e-05 57 rna-FME351_LOCUS3 31249532 6 19078 19134 Rotaria socialis 392032 CAA|GTAAAATCAA...TTTTTTTTAATC/TTTTTTTTAATC...TTTAG|AAT 2 1 52.067
174208793 GT-AG 0 1.000000099473604e-05 54 rna-FME351_LOCUS3 31249532 7 18195 18248 Rotaria socialis 392032 TCG|GTAAGTCATT...CAATTTATGAAT/TTATGAATCAAT...AATAG|AAT 0 1 95.447

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);