introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 30863764

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
172492331 GT-AG 0 1.000000099473604e-05 59 rna-XM_025312242.1 30863764 1 767959 768017 Rhizophagus irregularis 588596 GAG|GTAATAAAAT...TATATCTTACTT/ATCTTACTTATT...TTTAG|ATA 0 1 23.549
172492332 GT-AG 0 1.360360119756777e-05 76 rna-XM_025312242.1 30863764 2 768094 768169 Rhizophagus irregularis 588596 CAG|GTAAGCATTC...AAATTCTTTTCG/TTTCGGCTGATT...TACAG|TAA 1 1 32.196
172492333 GT-AG 0 0.0004491384152384 73 rna-XM_025312242.1 30863764 3 768223 768295 Rhizophagus irregularis 588596 CTT|GTAAGCAATT...AATTCTTTATTC/TAATTCTTTATT...TTTAG|GAA 0 1 38.225
172492334 GT-AG 0 0.0067228123329849 62 rna-XM_025312242.1 30863764 4 768365 768426 Rhizophagus irregularis 588596 AAG|GTATGCTAGA...TTAATTTTAAAA/TTAATTTTAAAA...TGTAG|GGA 0 1 46.075
172492335 GT-AG 0 0.0024538506664649 71 rna-XM_025312242.1 30863764 5 768526 768596 Rhizophagus irregularis 588596 GAG|GTATAAATTA...ATTGCTTTAATA/ATTTTTCTAACA...ATTAG|ATT 0 1 57.338
172492336 GT-AG 0 1.000000099473604e-05 73 rna-XM_025312242.1 30863764 6 768703 768775 Rhizophagus irregularis 588596 CAA|GTTAGTAATT...AATACTTTATTC/ACTTTATTCATT...TGCAG|AGA 1 1 69.397
172492337 GT-AG 0 0.0006942586095396 74 rna-XM_025312242.1 30863764 7 768880 768953 Rhizophagus irregularis 588596 GGT|GTAAGTTTTG...TTATTTTTAGGT/AAATATCTCATT...TTAAG|GGA 0 1 81.229

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);