WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 30863725

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
172492146	GT-AG	1.000000099473604e-05	105	rna-XM_025312284.1 30863725	1	1096729	1096833	Rhizophagus irregularis 588596	AAA\|GTAAGATATT...ATAACCTTTTCT/AATATTTTTACG...AACAG\|CTT	1	1	1.916
172492147	GT-AG	1.000000099473604e-05	73	rna-XM_025312284.1 30863725	2	1096331	1096403	Rhizophagus irregularis 588596	CAG\|GTAAGATGAA...ATTGTTTTATTA/AATTGTTTTATT...TATAG\|ACC	2	1	24.162
172492148	GT-AG	0.0001065225673608	74	rna-XM_025312284.1 30863725	3	1096123	1096196	Rhizophagus irregularis 588596	CAG\|GTATGAATAT...TTTTTTTTAACC/TTTTTTTTAACC...AATAG\|CAT	1	1	33.333
172492149	GT-AG	1.000000099473604e-05	66	rna-XM_025312284.1 30863725	4	1095982	1096047	Rhizophagus irregularis 588596	AAG\|GTTAGTTTAA...TTATTTTTAATT/TTATTTTTAATT...TATAG\|ACG	1	1	38.467
172492150	GT-AG	1.000000099473604e-05	71	rna-XM_025312284.1 30863725	5	1095676	1095746	Rhizophagus irregularis 588596	ACG\|GTAATATTAA...AAATTATTGACA/AAATTATTGACA...ATTAG\|AAA	2	1	54.552
172492151	GT-AG	1.0264041171340312e-05	70	rna-XM_025312284.1 30863725	6	1095508	1095577	Rhizophagus irregularis 588596	AGG\|GTAATTATAT...TTTTCATTAAAT/CAATTGCTAATT...ATTAG\|AGG	1	1	61.259
172492152	GT-AG	6.278028026386713e-05	71	rna-XM_025312284.1 30863725	7	1095298	1095368	Rhizophagus irregularis 588596	TTT\|GTAAGTTAAT...TTATGTTTAATT/TTATGTTTAATT...ATTAG\|GAT	2	1	70.773
172492153	GT-AG	0.014836488294107	62	rna-XM_025312284.1 30863725	8	1094967	1095028	Rhizophagus irregularis 588596	GTG\|GTATGTTTAT...AGGTTATTAATT/AGGTTATTAATT...ATCAG\|CTC	1	1	89.185

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);