WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 30293558

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
169297781	GT-AG	1.000000099473604e-05	8611	rna-RIMITATOR_LOCUS350 30293558	1	56374889	56383499	Ranitomeya imitator 111125	CCG\|GTGAGGGCGC...CTGGTTTTAATC/CTGGTTTTAATC...TCCAG\|AAA	0	1	11.524
169297782	GT-AG	1.000000099473604e-05	3230	rna-RIMITATOR_LOCUS350 30293558	2	56383752	56386981	Ranitomeya imitator 111125	ACG\|GTAAGACCTG...GATCCCTTTCTA/TTAGTGCTTAGG...TGCAG\|GTG	0	1	27.138
169297783	GT-AG	1.000000099473604e-05	640	rna-RIMITATOR_LOCUS350 30293558	3	56387092	56387731	Ranitomeya imitator 111125	TCG\|GTGAGTGACA...GGTCACTTAGGC/CCATAGGTCACT...TGCAG\|GCT	2	1	33.953
169297784	GT-AG	1.000000099473604e-05	484	rna-RIMITATOR_LOCUS350 30293558	4	56387890	56388373	Ranitomeya imitator 111125	CAG\|GTGAGCGCCT...GCTTCCTTCATC/GCTTCCTTCATC...CATAG\|GGG	1	1	43.742
169297785	GT-AG	1.000000099473604e-05	369	rna-RIMITATOR_LOCUS350 30293558	5	56388484	56388852	Ranitomeya imitator 111125	CAG\|GTCAGGAGGC...TCCCCTCTATTC/GTGAGGCTGACC...CTCAG\|GTG	0	1	50.558
169297786	GT-AG	1.000000099473604e-05	90	rna-RIMITATOR_LOCUS350 30293558	6	56389021	56389110	Ranitomeya imitator 111125	AAG\|GTGAGGCTCC...TTATCATTGACA/TTATCATTGACA...CACAG\|CCT	0	1	60.967
169297787	GT-AG	1.000000099473604e-05	200	rna-RIMITATOR_LOCUS350 30293558	7	56389344	56389543	Ranitomeya imitator 111125	CAG\|GTAGGGGCGC...TCACTGTTGACA/CAGAATGTCACT...TCTAG\|GAA	2	1	75.403
169297788	GT-AG	1.000000099473604e-05	142	rna-RIMITATOR_LOCUS350 30293558	8	56389702	56389843	Ranitomeya imitator 111125	AAG\|GTAGGCACGG...ATTTTCTGAACC/TATTTTCTGAAC...TGCAG\|GTG	1	1	85.192

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);