WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 30057404

descending

id ▼	dinucleotide_pair	is_minor	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
168294088	GT-AG	0	1.000000099473604e-05	2089	rna-XM_007419898.3 30057404	1	504182	506270	Python bivittatus 176946	CTG\|GTGGGTGACC...CTAGTTTTGGCT/CAGTGGGTAAGT...CACAG\|GAG	1	1	4.786
168294089	GT-AG	0	1.000000099473604e-05	206	rna-XM_007419898.3 30057404	2	503860	504065	Python bivittatus 176946	ATG\|GTGAGACTCA...ATACTCTGAAAC/AATACTCTGAAA...TCCAG\|CTC	0	1	24.615
168294090	GT-AG	0	0.0446544915253965	587	rna-XM_007419898.3 30057404	3	503198	503784	Python bivittatus 176946	AAG\|GTAGCCTCAG...TTCCCCTTGCTT/AAGTTGCTAAAA...TCCAG\|GTT	0	1	37.436
168294091	GT-AG	0	1.000000099473604e-05	308	rna-XM_007419898.3 30057404	4	502801	503108	Python bivittatus 176946	ACG\|GTATGAAGAA...TTCATCTTCTCT/TAAGATTTCATC...TATAG\|CAG	2	1	52.65
168294092	GT-AG	0	1.000000099473604e-05	691	rna-XM_007419898.3 30057404	5	502076	502766	Python bivittatus 176946	AAG\|GTCAGTGGGC...AGCATTTTAACG/CTCTACTTCACA...GATAG\|GTA	0	1	58.462
168294093	GT-AG	1	99.99992539048324	88	rna-XM_007419898.3 30057404	6	501937	502024	Python bivittatus 176946	GTT\|GTATCCTTTT...TTTCCCTTAACC/TGTGGTTTTATG...ACTAG\|ATC	0	1	67.179
168294094	GT-AG	0	1.000000099473604e-05	883	rna-XM_007419898.3 30057404	7	500969	501851	Python bivittatus 176946	CAG\|GTAAGAACAA...TAAATATTGACT/TAAATATTGACT...CTCAG\|GAG	1	1	81.709

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);