introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 30057389

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
168294004 GT-AG 0 1.000000099473604e-05 6352 rna-XM_007419904.3 30057389 1 612247 618598 Python bivittatus 176946 GGG|GTGAGAGATC...TTTGCTTTATCC/CTTTGCTTTATC...CTCAG|AAA 0 1 33.4
168294005 GT-AG 0 1.000000099473604e-05 1121 rna-XM_007419904.3 30057389 2 618800 619920 Python bivittatus 176946 AAG|GTGAGCCATT...CTGCTTATAATT/GAGAAACTGATT...ACAAG|GTG 0 1 46.72
168294006 GT-AG 0 1.000000099473604e-05 87 rna-XM_007419904.3 30057389 3 620053 620139 Python bivittatus 176946 AAG|GTAGGGGACA...TTACTTTTATTA/TTGCTTCTTATT...CTCAG|GTG 0 1 55.467
168294007 GT-AG 0 1.000000099473604e-05 435 rna-XM_007419904.3 30057389 4 620294 620728 Python bivittatus 176946 CTG|GTAGGTTCTC...AGATACTTCTCT/CTGTTTTCCATC...TGCAG|ACA 1 1 65.673
168294008 GT-AG 0 1.000000099473604e-05 584 rna-XM_007419904.3 30057389 5 620791 621374 Python bivittatus 176946 CAG|GTGAGTGGGG...TGGGACTTATAT/CTGGGACTTATA...TGTAG|GAC 0 1 69.781
168294009 GT-AG 0 3.284673341976601e-05 224 rna-XM_007419904.3 30057389 6 621475 621698 Python bivittatus 176946 CAT|GTAAGTACTC...TTTGCCTTCTCT/ATGAGCCTAATA...ACAAG|ATC 1 1 76.408
168294010 GT-AG 0 0.0002501212373191 125 rna-XM_007419904.3 30057389 7 621833 621957 Python bivittatus 176946 AAG|GTAACTATAA...TCCATCCTAATT/TCCATCCTAATT...TATAG|AAA 0 1 85.288
168294011 GT-AG 0 0.011461647798663 110 rna-XM_007419904.3 30057389 8 622018 622127 Python bivittatus 176946 CAG|GTATGCTACT...GTTTTCTTTCCT/CTGTTTATAACT...CCTAG|ATC 0 1 89.264

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);