introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 30057374

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Suggested facets: dinucleotide_pair, score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
168293774 GT-AG 0 2.0096853712131585e-05 79396 rna-XM_015888360.2 30057374 1 997918 1077313 Python bivittatus 176946 AAG|GTAACGAGGG...TGCATTTTGATT/TGCATTTTGATT...TCCAG|TTT 0 1 6.628
168293775 GT-AG 0 1.000000099473604e-05 52394 rna-XM_015888360.2 30057374 2 1077380 1129773 Python bivittatus 176946 CAG|GTAAAACTAA...CTTTTGTTATAT/CCTTTTGTTATA...TTTAG|ACT 0 1 10.916
168293776 GT-AG 0 1.000000099473604e-05 70159 rna-XM_015888360.2 30057374 3 1130020 1200178 Python bivittatus 176946 ACC|GTGAGTAACA...TACAATTTAATT/TACAATTTAATT...CTCAG|ATC 0 1 26.901
168293777 GT-AG 0 2.1971535788761943e-05 13540 rna-XM_015888360.2 30057374 4 1200419 1213958 Python bivittatus 176946 AAG|GTACGTGCAG...TTTTTCTTGACT/TTTTTCTTGACT...GATAG|GCA 0 1 42.495
168293778 GT-AG 0 1.000000099473604e-05 22341 rna-XM_015888360.2 30057374 5 1214187 1236527 Python bivittatus 176946 CAG|GTGAATGTTT...TTTTGTTTAATT/TTTTGTTTAATT...TTCAG|GCA 0 1 57.31
168293779 GT-AG 0 1.000000099473604e-05 6310 rna-XM_015888360.2 30057374 6 1236609 1242918 Python bivittatus 176946 AAG|GTAACAGACT...TTTCACTTGCCA/GTTCTCTCCATG...CACAG|AGT 0 1 62.573
168293780 GT-AG 0 1.000000099473604e-05 2925 rna-XM_015888360.2 30057374 7 1243327 1246251 Python bivittatus 176946 CAG|GTGAGTGGCT...ACTTTTCTATCT/CTAGGTCTCAGA...CTTAG|GAT 0 1 89.084
168293781 GC-AG 0 1.000000099473604e-05 9874 rna-XM_015888360.2 30057374 8 1246383 1256256 Python bivittatus 176946 CAG|GCCAGTAAAC...TCTTTCTTTTCT/CACACTCTCACA...TACAG|CAT 2 1 97.596

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);