introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 30057334

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
168293339 GT-AG 0 1.000000099473604e-05 2059 rna-XM_025177755.1 30057334 1 670669 672727 Python bivittatus 176946 AGG|GTGAGGATGG...AAAACTTTTACA/TCATTGCTCATT...CTCAG|ACT 1 1 8.766
168293340 GT-AG 0 1.000000099473604e-05 2355 rna-XM_025177755.1 30057334 2 668219 670573 Python bivittatus 176946 AAG|GTAAATAAAA...CGATCCCTATCC/CTACATATCACC...CCTAG|GAT 0 1 19.723
168293341 GT-AG 0 1.000000099473604e-05 2965 rna-XM_025177755.1 30057334 3 665122 668086 Python bivittatus 176946 AAG|GTAGGAGGCT...TCAACTCTGATC/TCAACTCTGATC...CCTAG|ATT 0 1 34.948
168293342 GT-AG 0 1.000000099473604e-05 360 rna-XM_025177755.1 30057334 4 664610 664969 Python bivittatus 176946 TGG|GTAAAAGCAG...AGAGCTTTGTTT/CTGATGCTGATA...TCCAG|GAA 2 1 52.48
168293343 GT-AG 0 6.496943121212847e-05 1046 rna-XM_025177755.1 30057334 5 663459 664504 Python bivittatus 176946 CAG|GTATAGTCAT...TTTTTTTTCTTG/TGGCAGCTGACT...TACAG|AGC 2 1 64.591
168293344 GT-AG 0 1.000000099473604e-05 2668 rna-XM_025177755.1 30057334 6 660718 663385 Python bivittatus 176946 TTG|GTAAGTCTAG...AGGTTTTTGGTT/GGTAGGCTGACT...TTCAG|AGT 0 1 73.01
168293345 GT-AG 0 1.000000099473604e-05 384 rna-XM_025177755.1 30057334 7 660257 660640 Python bivittatus 176946 CAG|GTAGAAAGCA...TTCATTTTGACC/TTCATTTTGACC...AACAG|CAC 2 1 81.892
168293346 GT-AG 0 0.0001740960413168 854 rna-XM_025177755.1 30057334 8 659269 660122 Python bivittatus 176946 GAC|GTAATTCATC...CTGTTCTTATCT/GCTGTTCTTATC...CCTAG|GCT 1 1 97.347

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);