introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 30057323

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
168293273 GT-AG 0 1.000000099473604e-05 3623 rna-XM_007419792.3 30057323 1 281893 285515 Python bivittatus 176946 GAG|GTGAGACTGA...ACCTCTTTTTCT/GAGTGATTTACC...CACAG|GCT 2 1 39.493
168293274 GT-AG 0 1.000000099473604e-05 919 rna-XM_007419792.3 30057323 2 280913 281831 Python bivittatus 176946 GCT|GTAAGTCCAG...CTCCTCTTTTCT/GCATCTATTATT...TACAG|GAT 0 1 43.913
168293275 GT-AG 0 1.399314673431639e-05 605 rna-XM_007419792.3 30057323 3 280212 280816 Python bivittatus 176946 GAA|GTAAGCAGCT...CTCTCCCTACTG/ATTGGCCTGATG...TCCAG|GAA 0 1 50.87
168293276 GT-AG 0 1.000000099473604e-05 119 rna-XM_007419792.3 30057323 4 279931 280049 Python bivittatus 176946 AAG|GTAGGGTGTA...TGTGCTTTCTCT/GGGATATTGATC...TACAG|GTG 0 1 62.609
168293277 GT-AG 0 1.000000099473604e-05 432 rna-XM_007419792.3 30057323 5 279373 279804 Python bivittatus 176946 ACG|GTGAGCTGCT...TCCTCCTTTCTC/TCTCTCCTCACT...TCCAG|AAC 0 1 71.739
168293278 GT-AG 0 1.000000099473604e-05 759 rna-XM_007419792.3 30057323 6 278393 279151 Python bivittatus 176946 CAG|GTAAGCACCG...TTTCCCTTCCCT/GCTATATTAACC...TACAG|AAT 2 1 87.754
168293279 GT-AG 0 1.000000099473604e-05 1627 rna-XM_007419792.3 30057323 7 276722 278348 Python bivittatus 176946 GAG|GTAAGTGACA...CCATCATCAACT/CATCAACTGATG...TACAG|AGA 1 1 90.942
168293280 GT-AG 0 0.0004854241354256 375 rna-XM_007419792.3 30057323 8 276264 276638 Python bivittatus 176946 GAG|GTAAGCTGAC...CATTCCTTAACT/CATTCCTTAACT...TCCAG|GTG 0 1 96.957

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);