WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 30001227

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
168078123	GT-AG	1.000000099473604e-05	97	rna-XM_009353170.2 30001227	1	3537844	3537940	Pyrus x bretschneideri 225117	AAG\|GTAAAGACCT...ATGTTCATAACG/TATATGTTCATA...CGAAG\|GAG	0	1	20.635
168078124	GT-AG	0.0155823772901806	95	rna-XM_009353170.2 30001227	2	3537659	3537753	Pyrus x bretschneideri 225117	GAG\|GTTTTCTTCT...TTCTTTTTACTC/TTTTTACTCACG...TTTAG\|AAA	0	1	25.397
168078125	GT-AG	0.0043828729803145	92	rna-XM_009353170.2 30001227	3	3537467	3537558	Pyrus x bretschneideri 225117	TAG\|GTATATGTTA...AGTTTTTTGATC/AGTTTTTTGATC...CTCAG\|GGA	1	1	30.688
168078126	GT-AG	0.0002377946233215	130	rna-XM_009353170.2 30001227	4	3537266	3537395	Pyrus x bretschneideri 225117	GCT\|GTAAGTCTTC...ATCTTCTTATGA/AATCTTCTTATG...TGCAG\|ATT	0	1	34.444
168078127	GT-AG	1.000000099473604e-05	138	rna-XM_009353170.2 30001227	5	3537039	3537176	Pyrus x bretschneideri 225117	AAG\|GTTTGAGATA...AGTTCACTGATG/AGTTTGTTCATG...TGCAG\|CCA	2	1	39.153
168078128	GT-AG	0.0002929282718021	75	rna-XM_009353170.2 30001227	6	3536843	3536917	Pyrus x bretschneideri 225117	CTT\|GTACGTCATC...ATTACCTTTTCC/GTTACATTCATT...TGCAG\|ATT	0	1	45.556
168078129	GT-AG	1.000000099473604e-05	96	rna-XM_009353170.2 30001227	7	3536603	3536698	Pyrus x bretschneideri 225117	CAG\|GTTATAACTT...GTTGGCTAGATG/ATATTTTCCACT...TGCAG\|AGA	0	1	53.175
168078130	GT-AG	0.006526524147919	106	rna-XM_009353170.2 30001227	8	3536162	3536267	Pyrus x bretschneideri 225117	AAA\|GTATTTATCT...TTTTTTCTAACC/TTTTTTCTAACC...TGCAG\|GGC	2	1	70.899
168078131	GT-AG	1.000000099473604e-05	80	rna-XM_009353170.2 30001227	9	3535841	3535920	Pyrus x bretschneideri 225117	AAG\|GTAAATGAGC...ATAACCTTCATA/ATAACCTTCATA...TACAG\|TTA	0	1	83.651

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);