WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 30001155

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
168077506	GT-AG	1.1806159311812567e-05	350	rna-XM_009360792.2 30001155	1	106532	106881	Pyrus x bretschneideri 225117	GCG\|GTACTACTTT...GTTAATTTAAAA/AGTTAGTTAATT...GACAG\|GCG	1	1	11.416
168077507	GT-AG	0.000769119642372	362	rna-XM_009360792.2 30001155	2	104937	105298	Pyrus x bretschneideri 225117	ACG\|GTAACATCGC...TTTGTTTTAAAT/TTTGTTTTAAAT...TATAG\|GCA	1	1	51.75
168077508	GT-AG	1.000000099473604e-05	179	rna-XM_009360792.2 30001155	3	104575	104753	Pyrus x bretschneideri 225117	ACG\|GTGATTTTCC...GATGTCTTGTTG/CTTGGTCTGATT...CGCAG\|AAA	1	1	57.736
168077509	GT-AG	0.0001116983189693	126	rna-XM_009360792.2 30001155	4	104165	104290	Pyrus x bretschneideri 225117	AAG\|GTATAGTGGT...TTACTCATGATT/TTATTACTCATG...TCTAG\|ATA	0	1	67.026
168077510	GT-AG	0.0002583340431454	162	rna-XM_009360792.2 30001155	5	103886	104047	Pyrus x bretschneideri 225117	CAG\|GTGCTCTTAA...ATATTCTTATCT/TATATTCTTATC...TGCAG\|GGC	0	1	70.854
168077511	GT-AG	1.4341852997066188e-05	303	rna-XM_009360792.2 30001155	6	103320	103622	Pyrus x bretschneideri 225117	CAG\|GTACTCGAAG...CTTGCTTGGACA/ATTTGACTCACA...AATAG\|GAC	2	1	79.457
168077512	GT-AG	0.000299908534861	258	rna-XM_009360792.2 30001155	7	102896	103153	Pyrus x bretschneideri 225117	CCT\|GTGAGCTCTC...GTTATCTTAGTT/TCTCGATTGACC...AATAG\|ACA	0	1	84.887
168077513	GT-AG	0.0005017099329092	118	rna-XM_009360792.2 30001155	8	102505	102622	Pyrus x bretschneideri 225117	AAT\|GTATGGATGA...CTTTTCATAATT/ACTTGTTTCACT...TGCAG\|CTT	0	1	93.817

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);