WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 29793414

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
166627084	GT-AG	1.000000099473604e-05	200	rna-XM_031520580.1 29793414	1	50644611	50644810	Punica granatum 22663	CAG\|GTAATTTGAT...AGCTTGTTGACT/TTTGTTTTCATT...ACTAG\|TGT	1	1	26.537
166627085	GT-AG	0.0053648086503326	985	rna-XM_031520580.1 29793414	2	50645167	50646151	Punica granatum 22663	GTG\|GTATGTTCCA...TTTTTCTTCATA/TTTTTCTTCATA...AATAG\|GGA	0	1	37.057
166627086	GT-AG	1.000000099473604e-05	93	rna-XM_031520580.1 29793414	3	50647244	50647336	Punica granatum 22663	GAA\|GTGTGTGCCT...TTTCATTTAGCT/GCATATTTCATT...TGCAG\|CTT	0	1	69.326
166627087	GT-AG	1.000000099473604e-05	156	rna-XM_031520580.1 29793414	4	50647493	50647648	Punica granatum 22663	CTG\|GTGAGATGAT...TGTGTCATGATT/TAATAACTGACA...TGCAG\|ATT	0	1	73.936
166627088	GT-AG	1.000000099473604e-05	138	rna-XM_031520580.1 29793414	5	50647995	50648132	Punica granatum 22663	CAG\|GTAGAAACAA...ATTTCCTTATGT/TTATCACTGACT...GGCAG\|GCC	1	1	84.161
166627089	GT-AG	0.0004530530847161	105	rna-XM_031520580.1 29793414	6	50648204	50648308	Punica granatum 22663	CCG\|GTACTGTTGC...TAATTTTTATCC/ATAATTTTTATC...TGCAG\|CAT	0	1	86.259
166627090	GT-AG	0.0012189110303145	474	rna-XM_031520580.1 29793414	7	50648432	50648905	Punica granatum 22663	AAG\|GTATGTATAC...AGCTTCTTATTG/CAGCTTCTTATT...CCAAG\|TCT	0	1	89.894

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);