WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 29563972

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
164840384	GT-AG	1.000000099473604e-05	599	rna-XM_010078922.1 29563972	1	888	1486	Pterocles gutturalis 240206	CAG\|GTGAGAAAGC...GTCTCTTTAAAA/AAAATATTAAGT...TGCAG\|GTT	1	1	21.333
164840385	GT-AG	1.000000099473604e-05	787	rna-XM_010078922.1 29563972	2	1579	2365	Pterocles gutturalis 240206	AAG\|GTGAAATAAA...ATCTGCTTATAC/CTTATACTCAAA...TTAAG\|GTG	0	1	30.769
164840386	GT-AG	3.5489831900822363e-05	2460	rna-XM_010078922.1 29563972	3	2465	4924	Pterocles gutturalis 240206	TCT\|GTAAGTGATC...CCTTCCTTCATG/CCTTCCTTCATG...TACAG\|AAA	0	1	40.923
164840387	GT-AG	0.0004898834918906	1074	rna-XM_010078922.1 29563972	4	5025	6098	Pterocles gutturalis 240206	CAG\|GTAATCTTTT...CAGCACTTAGCT/ACTTAGCTGAAC...TGAAG\|GTA	1	1	51.179
164840388	GT-AG	2.2703313654247075e-05	3141	rna-XM_010078922.1 29563972	5	6160	9300	Pterocles gutturalis 240206	AAC\|GTAGGTACCT...GAAACCTTAAGT/GGTTTATTTATT...TTCAG\|AAT	2	1	57.436
164840389	GT-AG	1.000000099473604e-05	1906	rna-XM_010078922.1 29563972	6	9410	11315	Pterocles gutturalis 240206	AAT\|GTGAGGATTC...TACCTCTTGCAG/CATGATTTTATG...TCTAG\|AAA	0	1	68.615
164840390	GT-AG	1.000000099473604e-05	1025	rna-XM_010078922.1 29563972	7	11394	12418	Pterocles gutturalis 240206	AAG\|GTGAGTTCTG...AGTGTCTAAAAC/TAGTGTCTAAAA...CCTAG\|GTG	0	1	76.615
164840391	GT-AG	0.0027884143006352	6219	rna-XM_010078922.1 29563972	8	12497	18715	Pterocles gutturalis 240206	AAG\|GTATGTTTGC...GATTTATTAACC/GATTTATTAACC...TTTAG\|GTC	0	1	84.615

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);