WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 29563936

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
164840089	GT-AG	1.000000099473604e-05	404	rna-XM_010074200.1 29563936	1	85286	85689	Pterocles gutturalis 240206	CTG\|GTAATGATCA...TTATTCTTCACG/TTATTCTTCACG...TGCAG\|GAG	1	1	15.401
164840090	GT-AG	1.000000099473604e-05	8437	rna-XM_010074200.1 29563936	2	76631	85067	Pterocles gutturalis 240206	AAG\|GTGAGTTCCC...TCCCCCTTCTCT/TTTGGAGTCAGT...TCCAG\|ATG	0	1	31.314
164840091	GT-AG	1.000000099473604e-05	43028	rna-XM_010074200.1 29563936	3	33324	76351	Pterocles gutturalis 240206	CAG\|GTAATAGGCA...ACTGTCTTGATT/ACTGTCTTGATT...AACAG\|GAG	0	1	51.679
164840092	GT-AG	1.000000099473604e-05	5797	rna-XM_010074200.1 29563936	4	27349	33145	Pterocles gutturalis 240206	CTG\|GTAGGATTCC...TTTCACTTACTG/CTGTTTCTAATT...TGAAG\|GTG	1	1	64.672
164840093	GT-AG	1.000000099473604e-05	7586	rna-XM_010074200.1 29563936	5	19629	27214	Pterocles gutturalis 240206	GAG\|GTAATAAAAA...TCTCCCTAAATA/AATATTGTCAGT...TTCAG\|CGA	0	1	74.453
164840094	GT-AG	2.7202507840833667e-05	5486	rna-XM_010074200.1 29563936	6	14022	19507	Pterocles gutturalis 240206	TAG\|GTCTGTACAG...TTTTCTTTAATA/TTGTTTCTTATT...TATAG\|GAA	1	1	83.285
164840095	GT-AG	1.000000099473604e-05	13762	rna-XM_010074200.1 29563936	7	210	13971	Pterocles gutturalis 240206	GGG\|GTAAGTAGAT...TTTTTTTTAAAA/TTTAAATTTATT...GGTAG\|TGG	0	1	86.934

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);