WtMTA: introns: 6 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

6 rows where transcript_id = 29563932

descending

id ▼	dinucleotide_pair	is_minor	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
164840061	GT-AG	0	0.0002756204041388	1246	rna-XM_010073758.1 29563932	1	4154	5399	Pterocles gutturalis 240206	ACC\|GTAAGTTTAA...CATTTTTTGCTT/TTTTTGCTTACG...GCCAG\|TCA	2	1	19.956
164840062	GT-AG	0	4.694587980697142e-05	820	rna-XM_010073758.1 29563932	2	5530	6349	Pterocles gutturalis 240206	CAG\|GTAATCTGTC...TGTATCTTCTCT/TGGATACTGACC...TTCAG\|GTT	0	1	34.211
164840063	GT-AG	0	9.07993555228709e-05	1736	rna-XM_010073758.1 29563932	3	6441	8176	Pterocles gutturalis 240206	AAT\|GTAAGGTTTT...TATTTTTTAGCT/TTTTAGCTAATT...TCTAG\|GCA	1	1	44.189
164840064	GT-AG	0	0.0001227294265327	921	rna-XM_010073758.1 29563932	4	8302	9222	Pterocles gutturalis 240206	AAT\|GTAAGTTCTT...ACATTCTTGCCA/AAATGCCTGAAG...TTCAG\|AAC	0	1	57.895
164840065	GT-AG	0	1.000000099473604e-05	945	rna-XM_010073758.1 29563932	5	9319	10263	Pterocles gutturalis 240206	AAT\|GTAAGTAGAT...CATGTTTTAACA/CATGTTTTAACA...TTTAG\|TTC	0	1	68.421
164840066	GT-AG	1	99.33206146550152	5580	rna-XM_010073758.1 29563932	6	10450	16029	Pterocles gutturalis 240206	TTT\|GTATCCTTTT...GCTTCCTTACCC/TGCTTCCTTACC...AACAG\|GTG	0	1	88.816

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);