WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 29501572

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
164360581	GT-AG	1.000000099473604e-05	543	rna-XM_005516299.2 29501572	2	17199146	17199688	Pseudopodoces humilis 181119	AAA\|GTCAGTTGAA...TCTTTCTTGATT/TCTTTCTTGATT...TTTAG\|AAC	0	1	3.772
164360582	GT-AG	1.0881347552433024e-05	1245	rna-XM_005516299.2 29501572	3	17199818	17201062	Pseudopodoces humilis 181119	CAG\|GTATTACACT...TTCACTGTAACC/TCAGGTTTCACT...TTTAG\|TGT	0	1	7.664
164360583	GT-AG	1.000000099473604e-05	2131	rna-XM_005516299.2 29501572	4	17201721	17203851	Pseudopodoces humilis 181119	AAG\|GTGAGTAAAT...TGTATTTTTTTC/CTGTTACACATG...TTTAG\|ATG	1	1	27.52
164360584	GT-AG	1.000000099473604e-05	416	rna-XM_005516299.2 29501572	5	17203939	17204354	Pseudopodoces humilis 181119	TGG\|GTAAGTAATT...GTGATTTTAGAT/TAGATATTTAGT...TGAAG\|GTA	1	1	30.145
164360585	GT-AG	2.0250043334975003e-05	1216	rna-XM_005516299.2 29501572	6	17204485	17205700	Pseudopodoces humilis 181119	CCG\|GTAAGATTTT...ACTCTTTTAATG/TGTTTTCTGATC...TCCAG\|ATT	2	1	34.068
164360586	GT-AG	0.0003846278535574	688	rna-XM_005516299.2 29501572	7	17205827	17206514	Pseudopodoces humilis 181119	AAA\|GTAAGTTTGA...GGTTCTTTATTG/TGGTTCTTTATT...GTCAG\|ACT	2	1	37.87
164360587	GT-AG	1.000000099473604e-05	1557	rna-XM_005516299.2 29501572	8	17206676	17208232	Pseudopodoces humilis 181119	ATG\|GTAAGAATCA...TCAATTTTAAAA/CTGGTTGTTATT...TTCAG\|GCA	1	1	42.728
164364558	GT-AG	1.000000099473604e-05	4131	rna-XM_005516299.2 29501572	1	17194848	17198978	Pseudopodoces humilis 181119	CAG\|GTGAGAGCGA...TTTTCTTTAATT/GTTTTATTCACT...TTCAG\|GCG		0	0.785

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);