WtMTA: introns: 10 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

10 rows where transcript_id = 29402373

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
163707556	GT-AG	1.000000099473604e-05	594	rna-XM_007225407.2 29402373	1	32481893	32482486	Prunus persica 3760	AAG\|GTCTGATTTT...TGGGTTTGAATT/ACCAATTTGATT...TTCAG\|ATT	0	1	2.321
163707557	GT-AG	0.0001982171134993	1517	rna-XM_007225407.2 29402373	2	32480299	32481815	Prunus persica 3760	GAT\|GTAAGTATAT...GATATCTTAATT/CTGCTTCTGATA...CACAG\|AGC	2	1	3.931
163707558	GT-AG	0.0039828827892791	86	rna-XM_007225407.2 29402373	3	32478173	32478258	Prunus persica 3760	AAG\|GTATGCACGT...TCATTTTTGATT/TGTTTTCTCATT...AACAG\|AAT	2	1	46.591
163707559	GT-AG	6.0401650527209655e-05	765	rna-XM_007225407.2 29402373	4	32476888	32477652	Prunus persica 3760	GAG\|GTAGGCTCCC...GAAAATTTGACT/GAAAATTTGACT...TGCAG\|GTT	0	1	57.465
163707560	GT-AG	0.0003300543006095	170	rna-XM_007225407.2 29402373	5	32476609	32476778	Prunus persica 3760	AAG\|GTATATGTAC...CTGTTATTAATG/CTGTTATTAATG...TACAG\|GCA	1	1	59.745
163707561	GT-AG	1.000000099473604e-05	77	rna-XM_007225407.2 29402373	6	32476419	32476495	Prunus persica 3760	AAG\|GTAAGTGCAG...AACTTCTTGTTT/CTTGTTTGTATA...TCCAG\|GTT	0	1	62.108
163707562	GT-AG	1.000000099473604e-05	465	rna-XM_007225407.2 29402373	7	32475766	32476230	Prunus persica 3760	CAG\|GTAAACATAT...GGTATCTGATAC/TGGTATCTGATA...GTCAG\|TAA	2	1	66.039
163707563	GT-AG	1.000000099473604e-05	88	rna-XM_007225407.2 29402373	8	32475017	32475104	Prunus persica 3760	AGT\|GTAAGGCTTC...AACACATTATTT/TATTATATCATA...TACAG\|GGT	0	1	79.862
163707564	GT-AG	1.000000099473604e-05	862	rna-XM_007225407.2 29402373	9	32473698	32474559	Prunus persica 3760	AAG\|GTATGGAGTT...CATCTCTAGATA/TTGGTGCTGATA...GGCAG\|GCT	1	1	89.419
163707565	GT-AG	1.000000099473604e-05	101	rna-XM_007225407.2 29402373	10	32473501	32473601	Prunus persica 3760	CAG\|GTGATCTTGA...CAGACCTTGCTA/GACTTTCTGACT...TCCAG\|GTC	1	1	91.426

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);