WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 29376556

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
163593958	GT-AG	0.0001397030282584	951	rna-XM_008238860.1 29376556	1	18742357	18743307	Prunus mume 102107	GAG\|GTAGTTTCTT...ATTTCTCTATTT/ATTCCGCTGACC...ATTAG\|ATT	0	1	5.648
163593959	GT-AG	0.0092499387089662	82	rna-XM_008238860.1 29376556	2	18743518	18743599	Prunus mume 102107	AGT\|GTAAGTTTTC...GTCATCTTAACA/GTCATCTTAACA...TGTAG\|ATT	0	1	11.378
163593960	GT-AG	0.0023275315312262	1064	rna-XM_008238860.1 29376556	3	18743854	18744917	Prunus mume 102107	AGA\|GTATGTGCAG...GTTCTTTTGATT/GTTCTTTTGATT...TGTAG\|TTG	2	1	18.308
163593961	GT-AG	1.000000099473604e-05	89	rna-XM_008238860.1 29376556	4	18745189	18745277	Prunus mume 102107	GAG\|GTTCGCATTG...TCTGTTTTGAGT/TCTGTTTTGAGT...TGCAG\|GCT	0	1	25.703
163593962	GT-AG	1.000000099473604e-05	201	rna-XM_008238860.1 29376556	5	18745362	18745562	Prunus mume 102107	TCT\|GTGAGTGTTT...TTGTCCTCAATC/CTTGTCCTCAAT...TCCAG\|GAT	0	1	27.995
163593963	GT-AG	2.8150685624609407e-05	141	rna-XM_008238860.1 29376556	6	18747443	18747583	Prunus mume 102107	CTG\|GTATAACCCA...CAAATTTAAACT/TTTAAACTGAGT...TTCAG\|CAT	2	1	79.291
163593964	GT-AG	0.0002604290850399	501	rna-XM_008238860.1 29376556	7	18747852	18748352	Prunus mume 102107	CAG\|GTAATTTTTA...GTGCTTTTGATT/TCAATTCTAATT...TGCAG\|ATT	0	1	86.603
163605010	GT-AG	0.0538924201742854	102	rna-XM_008238860.1 29376556	8	18748537	18748638	Prunus mume 102107	AGA\|GTATTTTTCT...TACGTTTAAGTA/AGCTTGCTGATG...TTCAG\|GTG		0	91.623

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);