WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 29350733

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
163479853	GT-AG	0.0003367678544243	651	rna-XM_034342904.1 29350733	1	10758915	10759565	Prunus dulcis 3755	GCG\|GTAAATTTTA...TCTGCATTGACT/CCTGATCTTATA...TGTAG\|GCC	0	1	37.416
163479854	GT-AG	0.0108727629937581	669	rna-XM_034342904.1 29350733	2	10757508	10758176	Prunus dulcis 3755	GAG\|GTACTCATCT...GTTGCTTTGATT/CTTTGATTTATT...GACAG\|ATT	0	1	55.679
163479855	GT-AG	1.000000099473604e-05	327	rna-XM_034342904.1 29350733	3	10756686	10757012	Prunus dulcis 3755	AAG\|GTTTGGTCAT...TTTTCTTTTGTC/CCAAATCTCACA...TGTAG\|GAA	0	1	67.929
163479856	GT-AG	0.0002169208625781	135	rna-XM_034342904.1 29350733	4	10756459	10756593	Prunus dulcis 3755	TAG\|GTAAGCCTGT...TTTTTCTTGAAG/AAATTTCTCAAT...AACAG\|TTA	2	1	70.205
163479857	GT-AG	0.0005435631894243	90	rna-XM_034342904.1 29350733	5	10756281	10756370	Prunus dulcis 3755	CAG\|GTATATGTTA...TGTTTCATACTA/CTATGTTTCATA...TTCAG\|AGG	0	1	72.383
163479858	GT-AG	1.000000099473604e-05	89	rna-XM_034342904.1 29350733	6	10756077	10756165	Prunus dulcis 3755	AAG\|GTTCAAGGTT...TGAGATTTGACT/ATGTTTGTCATT...TTTAG\|TCA	1	1	75.229
163479859	GT-AG	1.000000099473604e-05	85	rna-XM_034342904.1 29350733	7	10755865	10755949	Prunus dulcis 3755	CAG\|GTAGGTGTGT...TAGATTTTATAT/ATATAGTTTATT...CTCAG\|GGG	2	1	78.372
163479860	GT-AG	0.002608985587948	289	rna-XM_034342904.1 29350733	8	10755401	10755689	Prunus dulcis 3755	AAG\|GTATTTGCCT...GCTTTCTTAATT/GCTTTCTTAATT...ACCAG\|GAT	0	1	82.702

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);