WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 29350725

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
163479760	GT-AG	2.191676744151515e-05	1038	rna-XM_034356120.1 29350725	2	38598191	38599228	Prunus dulcis 3755	CAG\|GTATAAAGTA...TTTTTCTTTCCA/TGGTTTCTCAAA...ACCAG\|GGG	1	1	29.505
163479761	GT-AG	1.000000099473604e-05	162	rna-XM_034356120.1 29350725	3	38597840	38598001	Prunus dulcis 3755	GAG\|GTGCTGAGCC...GTTCTGTTAACT/TGTTAACTGATT...CTTAG\|GGT	1	1	33.172
163479762	GT-AG	1.000000099473604e-05	95	rna-XM_034356120.1 29350725	4	38597649	38597743	Prunus dulcis 3755	CAG\|GTCTGACATG...TGACTCTTATTA/TTGACTCTTATT...TGCAG\|TCA	1	1	35.034
163479763	GT-AG	1.000000099473604e-05	104	rna-XM_034356120.1 29350725	5	38597385	38597488	Prunus dulcis 3755	CAG\|GTTGCTGCAT...TTTCTCTTGCTT/TCTTGCTTCATC...TCCAG\|CTT	2	1	38.138
163479764	GT-AG	1.000000099473604e-05	82	rna-XM_034356120.1 29350725	6	38597170	38597251	Prunus dulcis 3755	CAG\|GTGACAAATT...TCTGTTTTATTT/TTCTGTTTTATT...CACAG\|ATG	0	1	40.718
163479765	GT-AG	0.0005007010531087	123	rna-XM_034356120.1 29350725	7	38595286	38595408	Prunus dulcis 3755	TGG\|GTATGGATTT...AACTTTTTAATT/ATATTATTAACT...AACAG\|GTG	0	1	74.879
163500806	GT-AG	1.000000099473604e-05	864	rna-XM_034356120.1 29350725	1	38600663	38601526	Prunus dulcis 3755	GAG\|GTAAAAATTC...TTTCGTTTGAAT/TTTTCTGTCACC...CTTAG\|AAG		0	3.065
163500807	GT-AG	1.000000099473604e-05	156	rna-XM_034356120.1 29350725	8	38594332	38594487	Prunus dulcis 3755	GTG\|GTAAGAAATG...TTGTTCATGATT/TTTCCTCTCATT...CTCAG\|GAA		0	90.359

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);