WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 29320889

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
163357171	GT-AG	0.0092500737368012	761	rna-XM_021956374.1 29320889	1	202507	203267	Prunus avium 42229	CGG\|GTACTCTCTC...CTCTTGTTAACT/CTCTTGTTAACT...TGTAG\|AAG	0	1	19.174
163357172	GT-AG	0.0001113166384192	113	rna-XM_021956374.1 29320889	2	203327	203439	Prunus avium 42229	CAG\|GTACTTTCTT...GTTGGGTTAATT/GTTGGGTTAATT...TGCAG\|TGA	2	1	24.975
163357173	GT-AG	0.0197599899055361	99	rna-XM_021956374.1 29320889	3	203590	203688	Prunus avium 42229	TGA\|GTATGTACAC...TGCTTCTTAATT/GTGTTTTTCACT...CACAG\|CAC	2	1	39.725
163357174	GT-AG	0.000118051222813	89	rna-XM_021956374.1 29320889	4	203738	203826	Prunus avium 42229	AAG\|GTATAAATTT...TTTTTTTTTTTT/GGCAGTTTGAAT...TGCAG\|TTT	0	1	44.543
163357175	GT-AG	3.936577774655124e-05	107	rna-XM_021956374.1 29320889	5	203944	204050	Prunus avium 42229	AAG\|GTTTTATTTC...AGTTTCTAATTT/CAGTTTCTAATT...AACAG\|ACT	0	1	56.047
163357176	GT-AG	1.7993094498892264e-05	83	rna-XM_021956374.1 29320889	6	204105	204187	Prunus avium 42229	AAG\|GTAATCACTT...ACTAACTTGATT/TTTAAACTAACT...AAAAG\|GTT	0	1	61.357
163357177	GT-AG	0.0001147543744263	106	rna-XM_021956374.1 29320889	7	204274	204379	Prunus avium 42229	CAC\|GTACGTAAGA...TTGTATTTAACC/TTGTATTTAACC...TGCAG\|TGA	2	1	69.813
163357178	GT-AG	0.0066193656938568	121	rna-XM_021956374.1 29320889	8	204489	204609	Prunus avium 42229	AAG\|GTTCCCTGCT...ATTAATTTAACA/ATTGAATTAATT...TGCAG\|GAG	0	1	80.531
163357179	GT-AG	0.0080944041021466	329	rna-XM_021956374.1 29320889	9	204769	205097	Prunus avium 42229	TCC\|GTATGATCCC...TTTTCGTTAGAG/ATTTTCGTTAGA...TTTAG\|GTA	0	1	96.165

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);