WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 29320856

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
163356925	GT-AG	0.0232722143186127	280	rna-XM_021965789.1 29320856	1	453244	453523	Prunus avium 42229	TTG\|GTATGCAACA...TTTTCCTTTTCT/CTTTTCTCCATG...TTCAG\|CAA	1	1	33.218
163356926	GT-AG	1.000000099473604e-05	97	rna-XM_021965789.1 29320856	2	452947	453043	Prunus avium 42229	CAG\|GTAATATCTT...TGATCATTGACC/TGATCATTGACC...TGCAG\|ATA	0	1	44.732
163356927	GT-AG	9.580790685026814e-05	209	rna-XM_021965789.1 29320856	3	452557	452765	Prunus avium 42229	CAG\|GTTTGTTATA...CTCTTCTTACTT/CCTCTTCTTACT...TACAG\|GGT	1	1	55.153
163356928	GT-AG	1.000000099473604e-05	153	rna-XM_021965789.1 29320856	4	452212	452364	Prunus avium 42229	CAG\|GTCAACTCTA...TCGATATTAACA/TCGATATTAACA...TATAG\|TTC	1	1	66.206
163356929	GT-AG	1.000000099473604e-05	327	rna-XM_021965789.1 29320856	5	451652	451978	Prunus avium 42229	GAG\|GTGCGACCTT...CAAATCTTAACC/TGGGTTTTCATT...TCCAG\|TAT	0	1	79.62
163356930	GT-AG	0.0472973508781027	96	rna-XM_021965789.1 29320856	6	451454	451549	Prunus avium 42229	CAG\|GTTTCCCTCT...GTTCTTTTCACT/GTTCTTTTCACT...TGTAG\|GTA	0	1	85.492
163356931	GT-AG	1.000000099473604e-05	214	rna-XM_021965789.1 29320856	7	451189	451402	Prunus avium 42229	CAG\|GTTAGAGATA...GTGCACTTATTC/AGTGCACTTATT...TTTAG\|GTT	0	1	88.428
163356932	GT-AG	8.725081410564151e-05	101	rna-XM_021965789.1 29320856	8	450983	451083	Prunus avium 42229	CAG\|GTTCATTCTC...TTTGTTTTAATG/TTTGTTTTAATG...TGCAG\|ATG	0	1	94.473

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);