WtMTA: introns: 5 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

5 rows where transcript_id = 29262664

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
163114571	GT-AG	1.000000099473604e-05	2151	rna-gnl\|WGS:VYZK\|PRUHIM_R11691_mrna 29262664	1	8899032	8901182	Prunella himalayana 670356	TGG\|GTAAGTATCA...TTTCTCTTTCTT/TTCTTCCTTATT...TCCAG\|AGC	2	1	20.748
163114572	GT-AG	1.000000099473604e-05	9994	rna-gnl\|WGS:VYZK\|PRUHIM_R11691_mrna 29262664	2	8901265	8911258	Prunella himalayana 670356	CGG\|GTGAGTATTA...TTTATTTTATTT/ATTTATTTTATT...AACAG\|TTT	0	1	34.694
163114573	GT-AG	1.000000099473604e-05	1873	rna-gnl\|WGS:VYZK\|PRUHIM_R11691_mrna 29262664	3	8911331	8913203	Prunella himalayana 670356	CAG\|GTAAGACCTT...ATTTTGTTATTT/TATTTTGTTATT...TGCAG\|GAT	0	1	46.939
163114574	GT-AG	1.000000099473604e-05	3926	rna-gnl\|WGS:VYZK\|PRUHIM_R11691_mrna 29262664	4	8913311	8917236	Prunella himalayana 670356	CAG\|GTAATACTTT...CTTCTTTTATTT/AAATGTTTTATT...TTCAG\|GGA	2	1	65.136
163114575	GT-AG	1.000000099473604e-05	11645	rna-gnl\|WGS:VYZK\|PRUHIM_R11691_mrna 29262664	5	8917347	8928991	Prunella himalayana 670356	TAA\|GTAAGTAAAT...TTGTTCTTACAT/GTTGTTCTTACA...TTCAG\|GTC	1	1	83.844

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);