WtMTA: introns: 6 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

6 rows where transcript_id = 29262648

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
163114500	GT-AG	1.000000099473604e-05	4494	rna-gnl\|WGS:VYZK\|PRUHIM_R11687_mrna 29262648	1	9996807	10001300	Prunella himalayana 670356	CAG\|GTGAGTGCCT...CTTGTTTTACCC/ACTTGTTTTACC...TGCAG\|GTT	2	1	17.769
163114501	GT-AG	1.000000099473604e-05	2116	rna-gnl\|WGS:VYZK\|PRUHIM_R11687_mrna 29262648	2	10001406	10003521	Prunella himalayana 670356	CAG\|GTAAATGGCC...AATTTCTTATTT/TAATTTCTTATT...CACAG\|ATT	2	1	31.388
163114502	GT-AG	2.208708048019134e-05	2239	rna-gnl\|WGS:VYZK\|PRUHIM_R11687_mrna 29262648	3	10003568	10005806	Prunella himalayana 670356	GAG\|GTATGAAGTA...CTTTCCTTTTCA/GTTGCATTCATT...TAAAG\|CTT	0	1	37.354
163114503	GT-AG	1.000000099473604e-05	5369	rna-gnl\|WGS:VYZK\|PRUHIM_R11687_mrna 29262648	4	10005916	10011284	Prunella himalayana 670356	CAG\|GTTGGTCTAG...ATCTCTCTACTA/GTTGAATTAATG...TGCAG\|ATA	1	1	51.492
163114504	GT-AG	1.000000099473604e-05	117	rna-gnl\|WGS:VYZK\|PRUHIM_R11687_mrna 29262648	5	10011394	10011510	Prunella himalayana 670356	TGG\|GTAAGATGCT...TTGTTCTTTGTG/GTTGTACACATA...TGCAG\|GGT	2	1	65.629
163114505	GT-AG	1.000000099473604e-05	830	rna-gnl\|WGS:VYZK\|PRUHIM_R11687_mrna 29262648	6	10011663	10012492	Prunella himalayana 670356	CAG\|GTGAGCAAAA...ACTTATTTAATC/ACTTATTTAATC...CTCAG\|GGG	1	1	85.344

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);